Galaxy Project

In this group: 352 papers · 33 members

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Biological Sciences

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This group is MIRRORING the Galaxy Project's CiteULike group at http://www.citeulike.org/user/galaxyproject. PLEASE ADD NEW PAPERS AT CiteULike, INSTEAD OF HERE. New papers will show up in Mendeley within a week. Tags on the papers are also imported from CiteULike. See http://galaxyproject.org/wiki/CiteULike for an explanation of the tags.

galaxyproject.org

analysis bioinformatics data integration genomics persistence reproducibility workflow

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Sathish Kumar Srinivasan

Sathish Kumar Srinivasan has joined this group

24 hours ago

Galaxy Project added documents to this group

ELK1 Uses Different DNA Binding Modes to Regulate Functionally Distinct Classes of Target Genes

Genome-wide analysis of p63 binding sites identifies AP-2 factors as co-regulators of epidermal differentiation

Characterization of Soil Bacterial Assemblies in Brazilian Savanna-Like Vegetation Reveals Acidobacteria Dominance

Specific CD8+ T Cell Responses Correlate with Control of SIV Replication in Mauritian Cynomolgus Macaques

BEDOPS: High performance genomic feature operations

18th May

Galaxy Project added documents to this group

Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome

Caspar-like Gene Depletion Reduces Leishmania Infection in Sand Fly Host Lutzomyia longipalpis

A Systematic Approach for Analysis of Peptide Array Kinome Data

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

CADDSuite - a workflow-enabled suite of open-source tools for drug discovery

11th May

Galaxy Project added documents to this group

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition

Identifying elemental genomic track types and representing them uniformly

The Transcriptional and Epigenomic Foundations of Ground State Pluripotency

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

4th May

Galaxy Project added a document to this group

xQTL workbench: a scalable web environment for multi-level QTL analysis

27th April

Galaxy Project added documents to this group

The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes

Drosophila melanogaster Zelda and Single-minded Collaborate to Regulate an Evolutionarily Dynamic CNS Midline Cell Enhancer

Enabling Data and Compute Intensive Workflows in Bioinformatics

Eoulsan: A Cloud Computing-Based Framework Facilitating High Throughput Sequencing Analyses

Reorganization of the host epigenome by a viral oncogene

23rd April

Stefan Amyotte has joined this group

21st April

Manav Kapoor added a document to this group

Variants Located Upstream of CHRNB4 on Chromosome 15q25.1 Are Associated with Age at Onset of Daily Smoking and Habitual Smoking

19th April

Manav Kapoor has joined this group

19th April

Galaxy Project added documents to this group

How to Analyze Gene Expression Using RNA-Sequencing Data Next Generation Microarray Bioinformatics

Insect Genomics

A de novo balanced t(2;6)(p15;p22.3) in a patient with West Syndrome disrupts a lnc-RNA

Advancing analytical algorithms and pipelines for billions of microbial sequences

Computational Strategies for the Genome-Wide Identification of cis-Regulatory Elements and Transcriptional Targets

14th April

Galaxy Project added documents to this group

Alu insertion profiling: Array-based methods to detect Alu insertions in the human genome

Transformations for the compression of FASTQ quality scores of next-generation sequencing data

Molecular convergence of the parasitic plant species <i>Cuscuta reflexa</i> and <i>Phelipanche aegyptiaca</i>

Computational Characterization of 3′ Splice Variants in the GFAP Isoform Family

Development of robust genomic simple sequence repeat markers for estimation of genetic diversity within and among bulb onion (<i>Allium cepa</i> L.) populations

7th April

Galaxy Project added documents to this group

Uniform standards for genome databases in forest and fruit trees

Advances in plant genome sequencing

Genome-wide mapping of transcription factor binding reveals developmental process integration and a fresh look at evolutionary dynamics

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

31st March

Galaxy Project added documents to this group

Germline copy number variants are not associated with globally acquired copy number changes in familial breast tumours

Argo: an integrative, interactive, text mining-based workbench supporting curation

YeastMine—an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit

Grinder: a versatile amplicon and shotgun sequence simulator

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

23rd March

Galaxy Project added documents to this group

Golden Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository

Tcf7 Is an Important Regulator of the Switch of Self-Renewal and Differentiation in a Multipotential Hematopoietic Cell Line

Rapid and efficient human mutation detection using a bench-top next-generation DNA sequencer

Visualizing the drug target landscape

Next generation quantitative genetics in plants

16th March

Galaxy Project added documents to this group

Combined Chromatin and Expression Analysis Reveals Specific Regulatory Mechanisms within Cytokine Genes in the Macrophage Early Immune Response

Transcriptional Regulation of Translocator Protein (Tspo) via a SINE B2-Mediated Natural Antisense Transcript in MA-10 Leydig Cells

Analyzing epigenome data in context of genome evolution and human diseases.

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data

Mouse genetics 2011: meeting report

12th March

Bart A Pannebakker

Bart A Pannebakker has joined this group

6th March

Bart A Pannebakker

Bart A Pannebakker is now following this group

6th March

Galaxy Project added a document to this group

RNA-Seq Read Alignments with PALMapper

2nd March

Galaxy Project added documents to this group

Cloud Computing in Biomedical Research

Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription

Experimental flux measurements on a network scale

Yabi: An online research environment for Grid, High Performance and Cloud computing

Whole-Genome Sequencing and Genetic Variant Analysis of a Quarter Horse Mare

24th February

Galaxy Project added documents to this group

Accurate estimation of substitution rates with neighbour-dependent models in a phylogenetic context

An alternative mode of microRNA target recognition

Biogem: an effective tool based approach for scaling up open source software development in bioinformatics

CodingMotif: Exact Determination of Overrepresented Nucleotide Motifs in Coding Sequences

Evolutionary insight from whole-genome sequencing of experimentally evolved microbes

20th February

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Researcher (at an Academic Institution)

Biological Sciences

33 members

Bart A Pannebakker

Marcos de Carvalho

Anna Pristoupilova

Nathaniel Street

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