Galaxy Project

In this group: 823 papers · 30 members

Mendeley

Biological Sciences

Groups

Group activity

New updates

Galaxy Project added documents to this group

LBR and Lamin A/C Sequentially Tether Peripheral Heterochromatin and Inversely Regulate Differentiation

Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny

CHANCE: comprehensive software for quality control and validation of ChIP-seq data

Genome-Wide Analysis of Stowaway-Like MITEs in Wheat Reveals High Sequence Conservation, Gene Association, and Genomic Diversification

Recurrent SETBP1 mutations in atypical chronic myeloid leukemia

1st February

Galaxy Project added documents to this group

The Pathogen-annotated Tracking Resource Network (PATRN) System: A Web-Based Resource to aid Food Safety, Regulatory Science, and Investigations of Foodborne Pathogens and Disease

A survey of tools for variant analysis of next-generation genome sequencing data

25th January

Galaxy Project added documents to this group

Heterogeneity of the Transition/Transversion Ratio in Drosophila and Hominidae Genomes

Genomic and Transcriptomic Analyses of Foodborne Bacterial Pathogens

Transformation of Natural Genetic Variation into Haemophilus Influenzae Genomes

Non-Synteny Regions in the Human Genome

Programming-by-Example Meets the Semantic Web: Using Ontologies and Web Services to Close the Semantic Gap

22nd January

Galaxy Project added documents to this group

Database resources for the tuberculosis community

Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars

MAPI: a software framework for distributed biomedical applications

TrAp: a Tree Approach for Fingerprinting Subclonal Tumor Composition

Cryopreserved Bovine Spermatozoal Transcript Profile as Revealed by High-Throughput Ribonucleic Acid Sequencing

18th January

Galaxy Project added documents to this group

DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression

CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features

EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data

Unsupervised Stability-Based Ensembles to Discover Reliable Structures in Complex Bio-molecular Data

Computational intelligence methods for bioinformatics and biostatistics 5th international meeting, CIBB 2008, Vietri sul Mare, Italy, October 3-4, 2008 : revised selected papers

10th January

Galaxy Project added documents to this group

Characteristics of Transposable Element Exonization within Human and Mouse

A Simple GUI-based Sequencing Format Conversion Tool for the Three NGS Platforms

ZOOM Lite: next-generation sequencing data mapping and visualization software

Cloud computing and the DNA data race

Enrichment of short interspersed transposable elements to embryonic stem cell-specific hypomethylated gene regions

9th January

Galaxy Project added documents to this group

PileLine: a toolbox to handle genome position information in next-generation sequencing studies

Data processing pipelines for comprehensive profiling of proteomics samples by label-free LC–MS for biomarker discovery

Regulation of alternative splicing by the core spliceosomal machinery

NAViGaTing the Micronome – Using Multiple MicroRNA Prediction Databases to Identify Signalling Pathway-Associated MicroRNAs

seqMINER: an integrated ChIP-seq data interpretation platform

8th January

Galaxy Project added documents to this group

Semi-Automatic In Silico Gap Closure Enabled De Novo Assembly of Two Dehalobacter Genomes from Metagenomic Data

Enhancer Chip: Detecting Human Copy Number Variations in Regulatory Elements

The Evolutionary Landscape of Alternative Splicing in Vertebrate Species

Detection and interpretation of genomic structural variation in health and disease

PFunkel: Efficient, Expansive, User-Defined Mutagenesis

4th January

Galaxy Project added documents to this group

Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database

Gramene database in 2010: updates and extensions

HGVbaseG2P: a central genetic association database

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

NIPP1 maintains EZH2 phosphorylation and promoter occupancy at proliferation-related target genes

31st December, 2012

Galaxy Project added documents to this group

A comprehensive framework for prioritizing variants in exome sequencing studies of Mendelian diseases

Use of ChIP-Seq data for the design of a multiple promoter-alignment method

Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions

The UCSC Genome Browser Database: update 2009

BioBIKE: A Web-based, programmable, integrated biological knowledge base

21st December, 2012

Galaxy Project added documents to this group

Latent Regulatory Potential of Human-Specific Repetitive Elements

Segmental duplications in genome-wide significant loci and housekeeping genes; warning for GAPDH and ACTB

Integration-Free Induced Pluripotent Stem Cells Model Genetic and Neural Developmental Features of Down Syndrome Etiology

14th December, 2012

Galaxy Project added documents to this group

Research Resource: Interplay between the Genomic and Transcriptional Networks of Androgen Receptor and Estrogen Receptor α in Luminal Breast Cancer Cells

An integrated functional genomics approach identifies the regulatory network directed by brachyury ( T ) in chordoma

Rapid transcriptome characterization and parsing of sequences in a non-model host-pathogen interaction; pea-Sclerotinia sclerotiorum

Promise of personalized omics to precision medicine

RNA-seq transcriptome analysis of male and female zebra finch cell lines

7th December, 2012

Galaxy Project added documents to this group

EuPathDB: The Eukaryotic Pathogen database

Identification, characterization and distribution of transposable elements in the flax (Linum usitatissimum L.) genome

SNP Discovery through Next-Generation Sequencing and Its Applications

Applying In Silico Integrative Genomics to Genetic Studies of Human Disease

30th November, 2012

Galaxy Project added documents to this group

Application of Statistics and Machine Learning for Risk Stratification of Heritable Cardiac Arrhythmias

Scientific Application Performance on HPC, Private and Public Cloud Resources: A Case Study Using Climate, Cardiac Model Codes and the NPB Benchmark Suite

Bioinformatics applied to gene transcription regulation

Does base-pairing strength play a role in microRNA repression?

A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses

24th November, 2012

Galaxy Project added documents to this group

A next generation sequence processing and analysis platform with integrated cloud-storage and high performance computing resources

TCF4 (e2-2; ITF2): A schizophrenia-associated gene with pleiotropic effects on human disease

WS-PGRADE/gUSE Generic DCI Gateway Framework for a Large Variety of User Communities

Exome-based linkage disequilibrium maps of individual genes: functional clustering and relationship to disease

NGS analyses by visualization with Trackster

16th November, 2012

Galaxy Project added documents to this group

Site-specific genome editing in Plasmodium falciparum using engineered zinc-finger nucleases

DNA methylation profile of Aire-deficient mouse medullary thymic epithelial cells

Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis

PPARG Binding Landscapes in Macrophages Suggest a Genome-Wide Contribution of PU.1 to Divergent PPARG Binding in Human and Mouse

A Streamlined Method for Detecting Structural Variants in Cancer Genomes by Short Read Paired-End Sequencing

9th November, 2012

Galaxy Project added documents to this group

Genome Sequences of Two Freshwater Betaproteobacterial Isolates, Limnohabitans Species Strains Rim28 and Rim47, Indicate Their Capabilities as Both Photoautotrophs and Ammonia Oxidizers

XiP: a computational environment to create, extend, and share workflows

SIV Genome-Wide Pyrosequencing Provides a Comprehensive and Unbiased View of Variation within and outside CD8 T Lymphocyte Epitopes

Atlas2 Cloud: a framework for personal genome analysis in the cloud

Functional Targets of the Monogenic Diabetes Transcription Factors HNF-1α and HNF-4α Are Highly Conserved Between Mice and Humans

2nd November, 2012

Galaxy Project added documents to this group

Phylogenetic application and analysis of horizontal transfer based on the prokaryote <I>eno</I> gene

Integrative Analysis of Somatic Mutations Altering MicroRNA Targeting in Cancer Genomes

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Genomic Approaches for Interrogating the Biochemistry of Medicinal Plant Species

The novel long non-coding RNA CRG regulates Drosophila locomotor behavior

26th October, 2012

Galaxy Project added documents to this group

lociNGS: A Lightweight Alternative for Assessing Suitability of Next-Generation Loci for Evolutionary Analysis

Genome-wide analysis of FoxO1 binding in hepatic chromatin: Potential involvement of FoxO1 in linking retinoid signaling to hepatic gluconeogenesis

The ecological and genetic basis of convergent thick-lipped phenotypes in cichlid fishes

Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing

BPELPower—A BPEL execution engine for geospatial web services

19th October, 2012

Galaxy Project added documents to this group

Computational tools for viral metagenomics and their application in clinical research

SOLE: Linking Research Papers with Science Objects Provenance and Annotation of Data and Processes

GenoSets: Visual Analytic Methods for Comparative Genomics

A genome-wide signature of glucocorticoid receptor binding in neuronal PC12 cells

Non-genotoxic carcinogen exposure induces defined changes in the 5-hydroxymethylome

12th October, 2012

Load More

About this group

Owned by Galaxy Project

Researcher (at an Academic Institution)

Biological Sciences

This group is MIRRORING the Galaxy Project's CiteULike group at http://www.citeulike.org/user/galaxyproject. PLEASE ADD NEW PAPERS AT CiteULike, INSTEAD OF HERE. New papers will show up in Mendeley within a week. Tags on the papers are also imported from CiteULike. See http://galaxyproject.org/wiki/CiteULike for an explanation of the tags.

galaxyproject.org

Bart A Pannebakker

Marcos de Carvalho

Anna Pristoupilova

Nathaniel Street

analysis bioinformatics data integration genomics persistence reproducibility workflow

Follow this group

Join this group

Ask to join this group

Start using Mendeley in seconds!