Synthetic Biology

A selection of papers related to the field of Synthetic Biology
Owned by Ricardo Vidal
View this group on Mendeley
Automated bioinformatic discovery: tools that tell you what you should know A case-study in synthetic biology
Ricardo Vidal (2009)
p. 98
Parts Registry
Randy Rettberg (2009)
http://www.partsregistry.org
International Genetic Engineering Machines
Randy Rettberg (2009)
http://www.igem.org
Genetic parts to program bacteria.
Christopher A Voigt (2006)
Current opinion in biotechnology 17 (5) p. 548-57
http://www.ncbi.nlm.nih.gov/pubmed/16978856
BBF RFC 0: Instructions to BBF RFC Authors
Chris Anderson, Austin Che, Mackenzie Cowell, Alistair El, Kim De, Drew Endy, Chris French, Tom Knight, Antonia Mayer (2008)
October p. 5-7
Proceedings of the Franklin Institute. 343
William Sellers, John H Towne, Vice President, John F Frazer, Washington Jones, Historical Society, H A Wise, F Emmerick, James Hall, Young Men (1864)
Preservation
Refactoring bacteriophage T7.
Leon Y Chan, Sriram Kosuri, Drew Endy (2005)
Molecular systems biology 1 p. 2005.0018
http://www.ncbi.nlm.nih.gov/pubmed/16729053
A tunable synthetic mammalian oscillator.
Marcel Tigges, Tatiana T Marquez-Lago, Jörg Stelling, Martin Fussenegger (2009)
Nature 457 (7227) p. 309-12
http://www.ncbi.nlm.nih.gov/pubmed/19148099
Solving a Hamiltonian Path Problem with a bacterial computer
Jordan Baumgardner (2009)
Journal of Biological Engineering
Rational design of memory in eukaryotic cells.
Caroline M Ajo-Franklin, David A Drubin, Julian A Eskin, Elaine P S Gee, Dirk Landgraf, Ira Phillips, Pamela A Silver (2007)
Genes & development 21 (18) p. 2271-6
http://www.ncbi.nlm.nih.gov/pubmed/17875664
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1973140&tool=pmcentrez&render...
The BioBricks Foundation:RFC
Reshma P Shetty, Drew Endy, Tom Knight (2009)
OpenWetWare.org
http
THE ENGINEERS' COUNCIL FOR PROFESSIONAL DEVELOPMENT.
Anonymous (1941)
Science (New York, N.Y.) 94 (2446) p. 456
http://www.ncbi.nlm.nih.gov/pubmed/17744800
A platform-based design environment for synthetic biological systems
D Densmore, A Van Devender, M Johnson, N Sritanyaratana (2009)
TAPIA '09: The Fifth Richard Tapia Celebration of Diversity in Computing Conference p. 24-29
http://portal.acm.org/citation.cfm?id=1565806
Biojade: A design and simulation tool for synthetic biological systems
JA Goler (2004)
DSpace. MIT (May)
http://scholar.google.com/scholar?q=intitle:BioJADE:+A+Design+and+Simulation+Tool+for+S...
TinkerCell: Modular CAD Tool for Synthetic Biology
Deepak Chandran, Frank T Bergmann, Herbert M. Sauro (2009)
DNA Sequence p. 23
http://arxiv.org/abs/0907.3976
GeneDesign: rapid, automated design of multikilobase synthetic genes.
Sarah M Richardson, Sarah J Wheelan, Robert M Yarrington, Jef D Boeke (2006)
Genome research 16 (4) p. 550-6
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1457031&tool=pmcentrez&render...
Antimony: a modular model definition language.
Lucian P Smith, Frank T Bergmann, Deepak Chandran, Herbert M Sauro (2009)
Bioinformatics (Oxford, England) 25 (18) p. 2452-4
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2735663&tool=pmcentrez&render...
Genetdes: automatic design of transcriptional networks
G Rodrigo, J Carrera, A Jaramillo (2007)
Bioinformatics
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/14/1857
Consistent design schematics for biological systems: standardization of representation in biological engineering.
Yukiko Matsuoka, Samik Ghosh, Hiroaki Kitano (2009)
Journal of the Royal Society, Interface / the Royal Society (June)
http://www.ncbi.nlm.nih.gov/pubmed/19493898
Draft Standard for Biobrick Biological Parts
Thomas F Knight (2007)
OpenWetWare.org
http://openwetware.org/index.php?title=The_BioBricks_Foundation:BBFRFC10&oldid=262187
On the origin of systems. Systems biology, synthetic biology and the origin of life
David Deamer (2009)
EMBO reports 10 p. S1-S4
http://www.nature.com/doifinder/10.1038/embor.2009.117
Making the most of synthetic biology. Strategies for synthetic biology development in Europe
Sibylle Gaisser, Thomas Reiss, Astrid Lunkes, Kristian M Müller, Hubert Bernauer (2009)
EMBO reports 10 p. S5-S8
http://www.nature.com/doifinder/10.1038/embor.2009.118
Synthetic biology and biosecurity. From low levels of awareness to a comprehensive strategy
Alexander Kelle (2009)
EMBO reports 10 p. S23-S27
http://www.nature.com/doifinder/10.1038/embor.2009.119
Goethe's dream. Challenges and opportunities for synthetic biology
Andrés Moya, Natalio Krasnogor, Juli Peretó, Amparo Latorre (2009)
EMBO reports 10 p. S28-S32
http://www.nature.com/doifinder/10.1038/embor.2009.120
Biology and the systems view. Is there a move towards systems approaches in the life sciences?
Bettina Bock von Wülfingen (2009)
EMBO reports 10 p. S37-S41
http://www.nature.com/doifinder/10.1038/embor.2009.124
Paradigm shifts versus fashion shifts? Systems and synthetic biology as new epistemic entities in understanding and making ‘life’
Thomas Potthast (2009)
EMBO reports 10 p. S42-S45
http://www.nature.com/doifinder/10.1038/embor.2009.130
Synthetic biology and patents. A European perspective
Berthold Rutz (2009)
EMBO reports 10 p. S14-S17
http://www.nature.com/doifinder/10.1038/embor.2009.131
Calculating life? A sociological perspective on systems biology
Jane Calvert, Joan H Fujimura (2009)
EMBO reports 10 p. S46-S49
http://www.nature.com/doifinder/10.1038/embor.2009.151
The challenging biology of transients. A view from the perspective of autonomy
Arantza Etxeberria, Kepa Ruiz-Mirazo (2009)
EMBO reports 10 p. S33-S36
http://www.nature.com/doifinder/10.1038/embor.2009.154
A new revolution? The place of systems biology and synthetic biology in the history of biology
Michel Morange (2009)
EMBO reports 10 p. S50-S53
http://www.nature.com/doifinder/10.1038/embor.2009.156
Systems biology and the virtual physiological human
Peter Kohl, Denis Noble (2009)
Molecular Systems Biology 5 (292) p. 1-6
http://www.nature.com/doifinder/10.1038/msb.2009.51
Reconstruction of genetic circuits.
David Sprinzak, Michael B Elowitz (2005)
Nature 438 (7067) p. 443-8
http://www.ncbi.nlm.nih.gov/pubmed/16306982
Synthetic biology: history, challenges and prospects.
Jim Haseloff, Jim Ajioka (2009)
Journal of the Royal Society, Interface / the Royal Society (June) p. 391-394
http://www.ncbi.nlm.nih.gov/pubmed/19493895
The Crucial Role of CS in Systems and Synthetic Biology
Jacques Cohen (2008)
Communications of the ACM 51 (5) p. 2006-2009
Engineering a molecular predation oscillator
R.I. Kitney, P.S. Freemont, V. Rouilly (2007)
IET Synthetic Biology 1 (1-2) p. 68
http://link.aip.org/link/ISBEBU/v1/i1-2/p68/s1&Agg=doi
An Introduction to Control of Synthetic Bio-molecular Systems
Domitilla Del Vecchio
Molecular Biology
Gene Designer: a synthetic biology tool for constructing artificial DNA segments.
Alan Villalobos, Jon E Ness, Claes Gustafsson, Jeremy Minshull, Sridhar Govindarajan (2006)
BMC bioinformatics 7 p. 285
http://www.ncbi.nlm.nih.gov/pubmed/16756672
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1523223&tool=pmcentrez&render...
Engineering BioBrick vectors from BioBrick parts.
Reshma P Shetty, Drew Endy, Thomas F Knight (2008)
Journal of biological engineering 2 p. 5
http://www.ncbi.nlm.nih.gov/pubmed/18410688
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2373286&tool=pmcentrez&render...
Designing biological systems
David A Drubin, Jeffrey C Way, Pamela A Silver (2007)
Genes & Development 21 (3) p. 242-254
http://www.ncbi.nlm.nih.gov/pubmed/17289915
Synthetic biology--putting engineering into biology.
Matthias Heinemann, Sven Panke (2006)
Bioinformatics (Oxford, England) 22 (22) p. 2790-9
http://www.ncbi.nlm.nih.gov/pubmed/16954140
Synthetic biology: from bacteria to stem cells
Ron Weiss (2007)
Molecular Biology p. 634-635
Authentic teaching and learning through synthetic biology.
Natalie Kuldell (2007)
Journal of biological engineering 1 p. 8
http://www.ncbi.nlm.nih.gov/pubmed/18271945
SynBioSS: the synthetic biology modeling suite
AD Hill, JR Tomshine, E Weeding, V (2008)
Bioinformatics p. 1-3
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/21/2551
Synthetic biology: new engineering rules for an emerging discipline.
Ernesto Andrianantoandro, Subhayu Basu, David K Karig, Ron Weiss (2006)
Molecular systems biology 2 p. 2006.0028
http://www.ncbi.nlm.nih.gov/pubmed/16738572
Gene synthesis demystified.
Michael J Czar, J Christopher Anderson, Joel S Bader, Jean Peccoud (2009)
Trends in biotechnology 27 (2) p. 63-72
http://www.ncbi.nlm.nih.gov/pubmed/19111926
Recursive construction of perfect DNA molecules from imperfect oligonucleotides.
Gregory Linshiz, Tuval Ben Yehezkel, Shai Kaplan, Ilan Gronau, Sivan Ravid, Rivka Adar, Ehud Shapiro (2008)
Molecular systems biology 4 (191) p. 191
http://www.ncbi.nlm.nih.gov/pubmed/18463615
Life Sciences and the web: a new era for collaboration.
Jonathan A Sagotsky, Le Zhang, Zhihui Wang, Sean Martin, Thomas S Deisboeck (2008)
Molecular systems biology 4 (201) p. 201
http://www.ncbi.nlm.nih.gov/pubmed/18594519
Synthetic biology: promises and challenges.
Luis Serrano (2007)
Molecular systems biology 3 (158) p. 158
http://www.ncbi.nlm.nih.gov/pubmed/18091727
Setting the standard in synthetic biology
Adam Arkin (2008)
Nature biotechnology 26 (7) p. 771-774
Roundtable on Synthetic Biology
Filippa Lentzos*, Gaymon Bennett, Jef Boeke, Drew Endy, Paul Rabinow (2008)
Biosocieties 3 (03) p. 311-323
http://www.journals.cambridge.org/abstract_S1745855208006224
Genetic design: rising above the sequence
Jonathan A Goler, Brian W Bramlett, Jean Peccoud (2008)
Trends in biotechnology 26 (August) p. 538-44
http://www.ncbi.nlm.nih.gov/pubmed/18687496
Synthetic Biology: scope, applications and implications
Richard Kitney, Jane Calvert, Richard Challis, Jon Cooper, Alistair Elfick, P.S. Freemont, Jim Haseloff, Mike Kelly, Lesley Paterson (2009)
p. 61
Synthetic Biology - An Overview and Recommendations for Anticipating and Addressing Emerging Risks
Denise Caruso (2008)
Science Progress (November) p. 1-16
Robustness analysis and tuning of synthetic gene networks.
Grégory Batt, Boyan Yordanov, Ron Weiss, Calin Belta (2007)
Bioinformatics (Oxford, England) 23 (18) p. 2415-22
http://www.ncbi.nlm.nih.gov/pubmed/17660209
Measuring the activity of BioBrick promoters using an in vivo reference standard.
Jason R Kelly, Adam J Rubin, Joseph H Davis, Caroline M Ajo-Franklin, John Cumbers, Michael J Czar, Kim de Mora, Aaron L Glieberman, Dileep D Monie, Drew Endy (2009)
Journal of biological engineering 3 p. 4
http://www.ncbi.nlm.nih.gov/pubmed/19298678
Synthetic biology. Microbes made to order.
Dan Ferber (2004)
Science (New York, N.Y.) 303 (5655) p. 158-61
http://www.ncbi.nlm.nih.gov/pubmed/14715986
Refinement and standardization of synthetic biological parts and devices.
Barry Canton, Anna Labno, Drew Endy (2008)
Nature biotechnology 26 (7) p. 787-93
http://www.nature.com/nbt/journal/v26/n7/abs/nbt1413.html
Idempotent Vector Design for the Standard Assembly of Biobricks
Thomas Knight, Randall Rettberg, Leon Y Chan, Drew Endy, Reshma P Shetty, Austin Che (2003)
http://scholar.google.com/scholar?cluster=16534658195131335164
A new biobrick assembly strategy designed for facile protein engineering
I Phillips, P Silver (2006)
DSpace. MIT Artificial Intelligence Laboratory: MIT
http://scholar.google.com/scholar?cluster=568769457239995687
BBF RFC 29: Naming of standards of physical composition of BioBrick parts
R Shetty, R Rettberg
dspace.mit.edu
http://scholar.google.com/scholar?cluster=
Targeted Development of Registries of Biological Parts
Jean Peccoud, Megan F. Blauvelt, Yizhi Cai, Kristal L. Cooper, Oswald Crasta, Emily C. DeLalla, Clive Evans, Otto Folkerts, Blair M. Lyons, Shrinivasrao P. Mane, Rebecca Shelton, Matthew A. Sweede, Sally A. Waldon (2008)
PLoS ONE 3 (7) p. 7
http://dx.plos.org/10.1371/journal.pone.0002671
Foundations for engineering biology.
Drew Endy (2005)
Nature 438 (7067) p. 449-53
http://www.ncbi.nlm.nih.gov/pubmed/16306983
Diffusion of synthetic biology: a challenge to biosafety
Markus Schmidt
Systems and Synthetic Biology
http://www.springerlink.com/content/838234qr720218w8
Synthetic Biology: Life, Jim, but Not As We Know It
Jennifer Hallinan (2008)
p. 15
http://www.springerlink.com/content/pn3527p33320l63w
A Synthetic Biology Approach to Understanding Biological Oscillations: Developing a Genetic Oscillator for Escherichia coli
Alexander J. Ninfa, Mariette R. Atkinson, Daniel Forger, Stephen Atkins, David Arps, Stephen Selinsky, Donald Court, Nicolas Perry, Avraham E. Mayo (2009)
p. 28
http://www.springerlink.com/content/m30q6l3226qq7620
Petri Nets for Systems and Synthetic Biology
Monika Heiner, David Gilbert, Robin Donaldson (2008)
Formal Methods for Computational Systems Biology 5016 p. 215-264
http://www.springerlink.com/index/10.1007/978-3-540-68894-5_7
Synthetic biology for synthetic chemistry
JD Keasling (2008)
http://pubs.acs.org/cgi-bin/sample.cgi/acbcct/2008/3/i01/html/cb7002434.html
Synthetic biology through biomolecular design and engineering.
Kevin Channon, Elizabeth H C Bromley, Derek N Woolfson (2008)
Current opinion in structural biology 18 (4) p. 491-8
http://www.ncbi.nlm.nih.gov/pubmed/18644449
RNA synthetic biology
FJ Isaacs, DJ Dwyer, JJ Collins (2006)
Nature biotechnology
http://www.nature.com/nbt/journal/v24/n5/abs/nbt1208.html
A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts
Y. Cai, B. Hartnett, C. Gustafsson, J. Peccoud (2007)
Bioinformatics 23 (20) p. 2760-2767
Synthetic biology: enormous possibility, exaggerated perils
Zachary N Russ (2008)
Journal of Biological Engineering 2 (1) p. 7
Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips.
Sriram Kosuri, Nikolai Eroshenko, Emily M Leproust, Michael Super, Jeffrey Way, Jin Billy Li, George M Church (2010)
Nature biotechnology 28 (12)
http://www.ncbi.nlm.nih.gov/pubmed/21113165
Quantifying DNA-protein interactions by double-stranded DNA arrays.
M L Bulyk, E Gentalen, D J Lockhart, G M Church (1999)
Nature biotechnology 17 (6) p. 573-7
http://www.ncbi.nlm.nih.gov/pubmed/10385322
Distributed biological computation with multicellular engineered networks
Sergi Regot, Javier Macia, Núria Conde, Kentaro Furukawa, Jimmy Kjellén, Tom Peeters, Stefan Hohmann, Eulàlia de Nadal, Francesc Posas, Ricard Solé (2010)
Nature p. 1-5
http://www.nature.com/doifinder/10.1038/nature09679
Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms.
Marnix H Medema, Rainer Breitling, Roel Bovenberg, Eriko Takano (2010)
Nature reviews. Microbiology 9 (2) p. 131-137
http://www.ncbi.nlm.nih.gov/pubmed/21189477
Programming an in vitro DNA oscillator using a molecular networking strategy
Kevin Montagne, Raphael Plasson, Yasuyuki Sakai, Teruo Fujii, Yannick Rondelez (2011)
Molecular Systems Biology 7 (466) p. 1-7
http://www.nature.com/doifinder/10.1038/msb.2010.120
Synthetic in vitro transcriptional oscillators
Jongmin Kim, Erik Winfree (2011)
Molecular Systems Biology 7 (465) p. 1-15
http://www.nature.com/doifinder/10.1038/msb.2010.119
Rational design of memory in eukaryotic cells.
Caroline M Ajo-Franklin, David a Drubin, Julian a Eskin, Elaine P S Gee, Dirk Landgraf, Ira Phillips, Pamela a Silver (2007)
Genes & development 21 (18) p. 2271-6
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1973140&tool=pmcentrez&render...
No Title
Towards a synthetic chloroplast.
Christina M Agapakis, Henrike Niederholtmeyer, Ramil R Noche, Tami D Lieberman, Sean G Megason, Jeffrey C Way, Pamela a Silver (2011)
PloS one 6 (4) p. e18877
http://www.ncbi.nlm.nih.gov/pubmed/21533097
Towards a synthetic chloroplast.
Christina M Agapakis, Henrike Niederholtmeyer, Ramil R Noche, Tami D Lieberman, Sean G Megason, Jeffrey C Way, Pamela A Silver (2011)
PloS one 6 (4) p. e18877
http://dx.plos.org/10.1371/journal.pone.0018877
The second wave of synthetic biology: from modules to systems
P.E.M. Purnick, R. Weiss (2009)
Nature Reviews Molecular Cell Biology 10 (6) p. 410–422
http://www.nature.com/nrm/journal/v10/n6/full/nrm2698.html?&url_ver=Z39.88-2004&amp...
Tunable signal processing in synthetic MAP kinase cascades.
Ellen C O'Shaughnessy, Santhosh Palani, James J Collins, Casim A Sarkar (2011)
Cell 144 (1) p. 119-131
http://linkinghub.elsevier.com/retrieve/pii/S0092867410014327
Informing biological design by integration of systems and synthetic biology.
Christina D Smolke, Pamela A Silver (2011)
Cell 144 (6) p. 855-9
http://www.ncbi.nlm.nih.gov/pubmed/21414477
Engineering microbial biofuel tolerance and export using efflux pumps
Mary J Dunlop, Zain Y Dossani, Heather L Szmidt, Hou Cheng Chu, Taek Soon Lee, Jay D Keasling, Masood Z Hadi, Aindrila Mukhopadhyay (2011)
Molecular Systems Biology 7 (487) p. 1-7
http://www.nature.com/doifinder/10.1038/msb.2011.21
Evidence of altered RNA stirs debate
Erika Check Hayden (2011)
Nature 473 (7348) p. 432-432
http://www.nature.com/news/2011/110525/full/473432a.html
Widespread RNA and DNA Sequence Differences in the Human Transcriptome
M. Li, I. X. Wang, Y. Li, A. Bruzel, A. L. Richards, J. M. Toung, V. G. Cheung (2011)
Science
http://www.sciencemag.org/content/early/2011/05/18/science.1207018.abstract
Genetic assembly tools for synthetic biology.
Billyana Tsvetanova, Lansha Peng, Xiquan Liang, Ke Li, Jian-Ping Yang, Tony Ho, Josh Shirley, Liewei Xu, Jason Potter, Wieslaw Kudlicki, Todd Peterson, Federico Katzen (2011)
Methods in enzymology 498 p. 327-48
http://www.ncbi.nlm.nih.gov/pubmed/21601684
Genetic assembly tools for synthetic biology.
Billyana Tsvetanova, Lansha Peng, Xiquan Liang, Ke Li, Jian-Ping Yang, Tony Ho, Josh Shirley, Liewei Xu, Jason Potter, Wieslaw Kudlicki, Todd Peterson, Federico Katzen (2011)
Methods in enzymology 498 p. 327-48
http://www.ncbi.nlm.nih.gov/pubmed/21601684
Methods for open innovation on a genome-design platform associating scientific, commercial, and educational communities in synthetic biology.
Tetsuro Toyoda (2011)
Methods in enzymology 498 p. 189-203
http://www.ncbi.nlm.nih.gov/pubmed/21601679
Environmentally Controlled Invasion of Cancer Cells by Engineered Bacteria
J Christopher Anderson, Elizabeth J Clarke, Adam P Arkin, Christopher A Voigt (2006)
Journal of Molecular Biology 355 (4) p. 619-627
http://www.sciencedirect.com/science/article/B6WK7-4HJRXGD-4/2/fa19d27888d475fad3047214...
Versatile RNA-sensing transcriptional regulators for engineering genetic networks.
Julius B Lucks, Lei Qi, Vivek K Mutalik, Denise Wang, Adam P Arkin (2011)
Proceedings of the National Academy of Sciences of the United States of America 108 (21) p. 8617-8622
http://www.pnas.org/cgi/content/abstract/108/21/8617
Versatile RNA-sensing transcriptional regulators for engineering genetic networks.
Julius B Lucks, Lei Qi, Vivek K Mutalik, Denise Wang, Adam P Arkin (2011)
Proceedings of the National Academy of Sciences of the United States of America 108 (21) p. 8617-8622
http://www.pnas.org/cgi/content/abstract/108/21/8617
A synthetic multicellular system for programmed pattern formation.
Subhayu Basu, Yoram Gerchman, Cynthia H Collins, Frances H Arnold, Ron Weiss (2005)
Nature 434 (7037) p. 1130-4
http://dx.doi.org/10.1038/nature03461
Versatile RNA-sensing transcriptional regulators for engineering genetic networks.
Julius B Lucks, Lei Qi, Vivek K Mutalik, Denise Wang, Adam P Arkin (2011)
Proceedings of the National Academy of Sciences of the United States of America 108 (21) p. 8617-8622
http://www.pnas.org/cgi/content/abstract/108/21/8617
Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
Harry Yim, Robert Haselbeck, Wei Niu, Catherine Pujol-Baxley, Anthony Burgard, Jeff Boldt, Julia Khandurina, John D Trawick, Robin E Osterhout, Rosary Stephen, Jazell Estadilla, Sy Teisan, H Brett Schreyer, Stefan Andrae, Tae Hoon Yang, Sang Yup Lee, Mark J Burk, Stephen Van Dien (2011)
Nature Chemical Biology
http://dx.doi.org/10.1038/nchembio.580
Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades
L. Qian, E. Winfree (2011)
Science 332 (6034) p. 1196-1201
http://www.sciencemag.org/content/332/6034/1196.abstract
Scaling Up DNA Computation
J. H. Reif (2011)
Science 332 (6034) p. 1156-1157
http://www.sciencemag.org/content/332/6034/1156.short
A simple DNA gate motif for synthesizing large-scale circuits.
Lulu Qian, Erik Winfree (2011)
Journal of the Royal Society, Interface / the Royal Society p. rsif.2010.0729-
http://rsif.royalsocietypublishing.org/cgi/content/abstract/rsif.2010.0729v1
The eugene language for synthetic biology.
Lesia Bilitchenko, Adam Liu, Douglas Densmore (2011)
Methods in enzymology 498 p. 153-72
http://www.ncbi.nlm.nih.gov/pubmed/21601677
Cell Fate Plug and Play: Direct Reprogramming and Induced Pluripotency
(2011)
Cell 145 (6) p. 827-830
http://www.cell.com/fulltext/S0092-8674(11)00597-6
A biological solution to a fundamental distributed computing problem.
Yehuda Afek, Noga Alon, Omer Barad, Eran Hornstein, Naama Barkai, Ziv Bar-Joseph (2011)
Science (New York, N.Y.) 331 (6014) p. 183-5
http://www.sciencemag.org/cgi/doi/10.1126/science.1193210
http://www.ncbi.nlm.nih.gov/pubmed/21233379
Global quantification of mammalian gene expression control.
Björn Schwanhäusser, Dorothea Busse, Na Li, Gunnar Dittmar, Johannes Schuchhardt, Jana Wolf, Wei Chen, Matthias Selbach (2011)
Nature 473 (7347) p. 337-42
http://dx.doi.org/10.1038/nature10098
Linear control theory for gene network modeling.
Yong-Jun Shin, Leonidas Bleris (2010)
PloS one 5 (9) p. 16
http://dx.plos.org/10.1371/journal.pone.0012785
Beyond open access: open discourse, the next great equalizer.
Andrew I Dayton (2006)
Retrovirology 3 p. 55
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1569436&tool=pmcentrez&render...
Global quantification of mammalian gene expression control.
Björn Schwanhäusser, Dorothea Busse, Na Li, Gunnar Dittmar, Johannes Schuchhardt, Jana Wolf, Wei Chen, Matthias Selbach (2011)
Nature 473 (7347) p. 337-42
http://www.ncbi.nlm.nih.gov/pubmed/21593866
Mouse library set to be knockout.
Elie Dolgin (2011)
Nature 474 (7351) p. 262-3
http://www.nature.com/news/2011/110615/full/474262a.html
Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation
Stuart A. Sievers, John Karanicolas, Howard W. Chang, Anni Zhao, Lin Jiang, Onofrio Zirafi, Jason T. Stevens, Jan Münch, David Baker, David Eisenberg (2011)
Nature
http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10154.html?WT.ec_id=NATUR...
A Synthetic Optogenetic Transcription Device Enhances Blood-Glucose Homeostasis in Mice
H. Ye, M. D.-E. Baba, R.-W. Peng, M. Fussenegger (2011)
Science 332 (6037) p. 1565-1568
http://www.sciencemag.org/content/332/6037/1565.abstract
Synthetic Physiology
B. Y. Chow, E. S. Boyden (2011)
Science 332 (6037) p. 1508-1509
http://www.sciencemag.org/content/332/6037/1508.short
Organization of Intracellular Reactions with Rationally Designed RNA Assemblies
C. J. Delebecque, A. B. Lindner, P. A. Silver, F. A. Aldaye (2011)
Science
http://www.sciencemag.org/content/early/2011/06/22/science.1206938.abstract
Widespread RNA and DNA Sequence Differences in the Human Transcriptome
M. Li, I. X. Wang, Y. Li, A. Bruzel, A. L. Richards, J. M. Toung, V. G. Cheung (2011)
Science 333 (6038) p. 53-58
http://www.sciencemag.org/content/333/6038/53.abstract
Computational design tools for synthetic biology.
Mario A Marchisio, Jörg Stelling (2009)
Current opinion in biotechnology 20 (4) p. 479-85
http://www.citeulike.org/user/amueller/article/5807570
Synthetic biology: putting synthesis into biology
Jing Liang, Yunzi Luo, Huimin Zhao (2011)
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 3 (1) p. 7-20
http://www3.interscience.wiley.com/cgi-bin/abstract/123582225/ABSTRACT
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An E. coli Cell-Free Expression Toolbox: Application to Synthetic Gene Circuits and Artificial Cells
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Synthetic biology: Simplifying design.
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An Engineered Microbial Platform for Direct Biofuel Production from Brown Macroalgae
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Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multi-enzyme catalysis
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Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota
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Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis
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A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads
S. M. Douglas, I. Bachelet, G. M. Church (2012)
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The Visionary | Science Comments
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The visionary.
Jocelyn Kaiser (2012)
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The Genetic Basis for Cancer Treatment Decisions
Janet E. Dancey, Philippe L. Bedard, Nicole Onetto, Thomas J. Hudson (2012)
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In silico design of functional DNA constructs.
Alan Villalobos, Mark Welch, Jeremy Minshull (2012)
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DNA robot kills cancer cells
Alla Katsnelson (2012)
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Nanopore genome sequencer makes its debut
Erika Check Hayden (2012)
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Synthetic biology: advancing biological frontiers by building synthetic systems
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