Chris Mungall
Berkeley, California, United States
Research field: Biological Sciences
ontologies
evo-devo-pheno
neurobiology
Publications
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Journal Article (50)
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Sebastian Köhler, Sandra C Doelken, Barbara J Ruef et al. (2013) Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research, 1-12. In F1000Research.Download PDF (814.85 KB)
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Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Erick Antezana et al. (2013) OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows., 2. In Journal of biomedical semantics 4 (1).Download PDF (4.99 MB)
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Laurel Cooper, Ramona L Walls, Justin Elser et al. (2013) The plant ontology as a tool for comparative plant anatomy and genomic analyses., e1. In Plant & cell physiology 54 (2).Download PDF (2.42 MB)
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David Osumi-Sutherland, Simon Reeve, Christopher J Mungall et al. (2012) A strategy for building neuroanatomy ontologies., 1-10. In Bioinformatics (Oxford, England).Download PDF (402.4 KB)Download PDF (402.4 KB)
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Chao-Kung Chen, Christopher J Mungall, Georgios V Gkoutos et al. (2012) MouseFinder: Candidate disease genes from mouse phenotype data., 858-66. In Human mutation 33 (5).Download PDF (517.03 KB)
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Paul D Thomas, Valerie Wood, Christopher J Mungall et al. (2012) On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report., e1002386. In PLoS computational biology 8 (2).Download PDF (99.77 KB)
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Ramona L Walls, Balaji Athreya, Laurel Cooper et al. (2012) Ontologies as integrative tools for plant science., ajb.1200222-. In American journal of botany.Download PDF (1.32 MB)
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Sandra C Doelken, Sebastian Köhler, Christopher J Mungall et al. (2012) Phenotypic overlap in the contribution of individual genes to CNV pathogenicity Accepted manuscript Disease Models & Mechanisms DMM..Download PDF (831.03 KB)
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Christopher J Mungall, Carlo Torniai, Georgios V Gkoutos et al. (2012) Uberon, an integrative multi-species anatomy ontology, R5. In Genome Biology 13 (1).
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Christopher J Mungall, Michael Bada, Tanya Z Berardini et al. (2011) Cross-product extensions of the Gene Ontology., 80-86. In Journal of Biomedical Informatics 44 (1).
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Generic (3)
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Christopher J Mungall, Heiko Dietze, Seth J Carbon et al. (2012) Continuous Integration of Open Biological Ontology Libraries, 1-4.Download PDF (1.57 MB)
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Y He, L Cowell, A D Diehl et al. (2009) VO: Vaccine Ontology.
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Norman Morrison, Michael Ashburner, Dawn Field et al. (2008) The Environment Ontology – Linking Environmental Data.
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Conference Proceedings (8)
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C Mungall (2011) POSH: The Prolog OWL Shell. In Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED2011), San Francisco, USA. June 5-6, 2011.
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Georgios V Gkoutos, Chris J Mungall, S Doelken et al. (2009) Entity/Quality-Based Logical Definitions for the Human Skeletal Phenome using PATO, 7069-72. In Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2009).Download PDF (239.08 KB)
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C J Mungall (2009) Experiences Using Logic Programming in Bioinformatics, 1-21. In Lecture notes in computer science.
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Vangelis Vassiliadis, Jan Wielemaker, C J Mungall (2009) Processing OWL2 ontologies using Thea: An application of logic programming. In 6th OWL Experiences and Directions Workshop (OWLED 2009).
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Michael Bada, C J Mungall, Lawrence Hunter (2008) A Call for an Abductive Reasoning Feature in OWL-Reasoning Tools toward Ontology Quality Control. In 5th OWL Experiences and Directions Workshop (OWLED 2008).
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C J Mungall, Georgios Gkoutos, Nicole Washington et al. (2007) Representing Phenotypes in OWL. In Proceedings of the OWLED 2007 Workshop on OWL: Experience and Directions.
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M Ashburner, C J Mungall, S E Lewis (2003) Ontologies for biologists: a community model for the annotation of genomic data, 227-235. In Cold Spring Harbor symposia on quantitative biology.Download PDF (340.09 KB)
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Jian Hu, D Nicholson, C J Mungall et al. (1996) WebinTool: a generic Web to database interface building tool, 285-290. In Database and Expert Systems Applications, 1996. Proceedings., Seventh International Workshop on.
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Working Paper (2)
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Christopher Mungall, Carlo Torniai, Alexander Diehl et al. (2011) Modularization for the Cell Ontology.Download PDF (242.4 KB)
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Christopher J. Mungall, Alan Ruttenberg, David Osumi-Sutherland (2010) Taking shortcuts with OWL using safe macros.Download PDF (146.96 KB)
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Thesis (1)
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