Christian Zmasek, PhD's Publications

Anthony Cammarato, Christian H. Ahrens, Nakissa N. Alayari, Ermir Qeli, Jasma Rucker, Mary C. Reedy, Christian M. Zmasek, Marjan Gucek, Robert N. Cole, Jennifer E. Van Eyk, Rolf Bodmer, Brian O'Rourke, Sanford I. Bernstein, D. Brian Foster (2011) A Mighty Small Heart: The Cardiac Proteome of Adult Drosophila melanogaster, e18497. In PLoS ONE 6 (4).

Mathieu Rouard, Valentin Guignon, Christelle Aluome, Marie-Angélique Laporte, Gaëtan Droc, Christian Walde, Christian M Zmasek, Christophe Périn, Matthieu G Conte (2011) GreenPhylDB v2.0: comparative and functional genomics in plants., 1095-1102. In Nucleic acids research 39 (September 2010).

Christian M Zmasek, Adam Godzik (2011) Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires, R4. In Genome Biology 12 (1).

Kyle Ellrott, Christian M Zmasek, Dana Weekes, S Sri Krishna, Constantina Bakolitsa, Adam Godzik, John Wooley (2011) TOPSAN: a dynamic web database for structural genomics., 2010-2012. In Nucleic acids research 39 (October 2010).

Katherine Wachmann, Cristina Pop, Bram J van Raam, Marcin Drag, Peter D Mace, Scott J Snipas, Christian Zmasek, Robert Schwarzenbacher, Guy S Salvesen, Stefan J Riedl (2010) Activation and specificity of human caspase-10., 8307-15. In Biochemistry 49 (38).

Qing Zhang, Christian M Zmasek, Adam Godzik (2010) Domain architecture evolution of pattern-recognition receptors., 263-272. In Immunogenetics 62 (5).

Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord Hendrix Barboza, Raoul JP Bonnal, Richard Bruskiewich, Jan C Bryne, José M Fernández, Akira Funahashi, Paul MK Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard Holland, Yoshinobu Kano, Edward A Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehvaslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwinski, Mark Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A Vos, Mark D Wilkinson, William York, Christian M Zmasek, Kiyoshi Asai, Toshihisa Takagi (2010) The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium, 8. In Journal of Biomedical Semantics 1 (1).

Timothy J Jegla, Christian M Zmasek, Serge Batalov, Surendra K Nayak (2009) Evolution of the human ion channel set., 2-23. In Combinatorial chemistry high throughput screening 12 (1).

Mira V Han, Christian M Zmasek (2009) PhyloXML: XML for evolutionary biology and comparative genomics., 356. In BMC Bioinformatics 10 (1).

Qing Zhang, Christian M Zmasek, Larry J Dishaw, M Gail Mueller, Yuzhen Ye, Gary W Litman, Adam Godzik (2008) Novel genes dramatically alter regulatory network topology in amphioxus, R123. In Genome Biology 9 (8).

Linda Z Holland, Ricard Albalat, Kaoru Azumi, Elia Benito-Gutiérrez, Matthew J Blow, Marianne Bronner-Fraser, Frederic Brunet, Thomas Butts, Simona Candiani, Larry J Dishaw, David E K Ferrier, Jordi Garcia-Fernàndez, Jeremy J Gibson-Brown, Carmela Gissi, Adam Godzik, Finn Hallböök, Dan Hirose, Kazuyoshi Hosomichi, Tetsuro Ikuta, Hidetoshi Inoko, Masanori Kasahara, Jun Kasamatsu, Takeshi Kawashima, Ayuko Kimura, Masaaki Kobayashi, Zbynek Kozmik, Kaoru Kubokawa, Vincent Laudet, Gary W Litman, Alice C McHardy, Daniel Meulemans, Masaru Nonaka, Robert P Olinski, Zeev Pancer, Len a Pennacchio, Mario Pestarino, Jonathan P Rast, Isidore Rigoutsos, Marc Robinson-Rechavi, Graeme Roch, Hidetoshi Saiga, Yasunori Sasakura, Masanobu Satake, Yutaka Satou, Michael Schubert, Nancy Sherwood, Takashi Shiina, Naohito Takatori, Javier Tello, Pavel Vopalensky, Shuichi Wada, Anlong Xu, Yuzhen Ye, Keita Yoshida, Fumiko Yoshizaki, Jr-Kai Yu, Qing Zhang, Christian M Zmasek, Pieter J de Jong, Kazutoyo Osoegawa, Nicholas H Putnam, Daniel S Rokhsar, Noriyuki Satoh, Peter W H Holland (2008) The amphioxus genome illuminates vertebrate origins and cephalochordate biology., 1100-11. In Genome research 18 (7).

Christian M Zmasek, Qing Zhang, Yuzhen Ye, Adam Godzik (2007) Surprising complexity of the ancestral apoptosis network., R226. In Genome Biology 8 (10).

Hilmar Lapp, Sendu Bala, JP Balhoff, Amy Bouck, Christian M. Zmasek (2007) The 2006 NESCent Phyloinformatics Hackathon: A Field Report, 287-296. In Evolutionary Bioinformatics.

J Leebens-Mack, T Vision, E Brenner, JE Bowers, S Cannon, MJ Clement, CW Cunningham, C DePamphilis, R DeSalle, JJ Doyle, JA Eisen, X Gu, J Harshman, Robert K Jansen, EA Kellogg, EV Koonin, Brent D Mishler, H Philippe, JC Pires, YL Qiu, Seung Y Rhee, K Sjölander, DE Soltis, Pamela S Soltis, DW Stevenson, K Wall, T Warnow, C Zmasek (2006) Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)., 231-237. In Omics a journal of integrative biology 10 (2).

Carolyn J Lawrence, Christian M Zmasek, R Kelly Dawe, Russell L Malmberg (2004) LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference., 1977-1979. In Bioinformatics 20 (12).

Christian M Zmasek, Sean R Eddy (2002) RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs., 14. In BMC Bioinformatics 3 (1).

Christian M. Zmasek, S R Eddy (2001) A simple algorithm to infer gene duplication and speciation events on a gene tree., 821-828. In Bioinformatics 17 (9).

C M Zmasek, S R Eddy (2001) ATV: display and manipulation of annotated phylogenetic trees., 383-384. In Bioinformatics 17 (4).

J B Hurov, T S Stappenbeck, Christian M. Zmasek, L S White, S H Ranganath, J H Russell, A C Chan, K M Murphy, H Piwnica-Worms (2001) Immune system dysfunction and autoimmune disease in mice lacking Emk (Par-1) protein kinase., 3206-3219. In Molecular and Cellular Biology 21 (9).

C Springer, S Krappmann, M Künzler, C Zmasek, G H Braus (1997) Regulation of the yeast HIS7 gene by the global transcription factor Abf1p., 136-146. In Molecular general genetics MGG 256 (2).