Egon Willighagen
post-doc, Department of Bioinformatics, Maastricht UniversityMaastricht, Netherlands
Research field: Chemistry - Analytical Chemistry
cheminformatics, chemometrics, metabolomics, drug discovery, crystallography, toxicology, nanomaterials
Publications
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Journal Article (27)
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Egon L Willighagen, Nina Jeliazkova, Barry Hardy et al. (2011) Computational toxicology using the OpenTox application programming interface and Bioclipse., 487. In BMC research notes 4 (1).Download PDF (1.23 MB)
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M. Rojas-Cherto, P. T. Kasper, E. L. Willighagen et al. (2011) Elemental Composition determination based on MSn, btr409-. In Bioinformatics.
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Matthias Samwald, Anja Jentzsch, Christopher Bouton et al. (2011) Linked open drug data for pharmaceutical research and development, 19. In Journal of Cheminformatics 3 (1).Download PDF (928.98 KB)
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Egon L Willighagen, Jonathan Alvarsson, Annsofie Andersson et al. (2011) Linking the Resource Description Framework to cheminformatics and proteochemometrics, S6. In Journal of Biomedical Semantics 2 (Suppl 1).Download PDF (1.43 MB)
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Noel O'Boyle, Rajarshi Guha, Egon Willighagen et al. (2011) Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on. In Journal of Cheminformatics 3 (1).Download PDF (1.21 MB)
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David Jessop, Sam Adams, Egon Willighagen et al. (2011) OSCAR4: a flexible architecture for chemical text-mining. In Journal of Cheminformatics 3 (1).Download PDF (1.4 MB)
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Egon L Willighagen, Martin P Brändle (2011) Resource description framework technologies in chemistry, 15. In Journal of Cheminformatics 3 (1).Download PDF (630.04 KB)
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Janna Hastings, Leonid Chepelev, Egon Willighagen et al. (2011) The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web, e25513. In PLoS ONE 6 (10).Download PDF (853.22 KB)
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Thomas Kuhn, Egon L Willighagen, Achim Zielesny et al. (2010) CDK-Taverna: an open workflow environment for cheminformatics., 159. In BMC bioinformatics 11 (1).Download PDF (2.02 MB)
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Gert Wohlgemuth, Pradeep Kumar Haldiya, Egon Willighagen et al. (2010) The Chemical Translation Service (CTS) - a web-based tool to improve standardization of metabolomic reports., btq476-. In Bioinformatics (Oxford, England) 26 (20).
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Book (2)
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E.L. Willighagen (2011) Groovy Cheminformatics with the Chemistry Development Kit.
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J. E. S. Wikberg, M. Eklund, E. L. Willighagen et al. (2011) Introduction to Pharmaceutial Bioinformatics. In Oakleaf Academic.
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Generic (1)
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F Floris, E L Willighagen, R Guha et al. (2010) The Blue Obelisk Descriptor Ontology..
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Book Section (4)
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Rajarshi Guha, Ola Spjuth, Egon Willighagen (2011) Collaborative Cheminformatics Applications, 399 - 422.
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Barry Hardy, Roman Affentranger, Emilio Benfenati et al. (2011) ToxBank: Supporting Integrated Data Analysis and Servicing of Alternative Testing Methods in Toxicology, 196-217. In Towards the Replacement of in vivo Repeated Dose Systemic Toxicity Testing.
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Egon L Willighagen (2010) 3D Molecular Representations, 65-87.
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JC Bradley, R Guha, A Lang et al. (2009) Beautifying Data in the Real World. In Beautiful Data.
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Conference Proceedings (3)
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E L Willighagen, J E S Wikberg (2010) Linking Open Drug Data to Cheminformatics and Proteochemometrics. In CEUR Workshop Proceedings.
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Y Zhang, P Murray-Rust, M Dove et al. (2004) JUMBO - An XML infrastructure for eScience, 930 - 933..
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P Murray-Rust, RC C Glen, HS S Rzepa et al. (2003) A semantic Grid for molecular science.
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Report (1)
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Egon L Willighagen, Miguel Howard (2007) Fast and Scriptable Molecular Graphics in Web Browsers without Java3D..
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Thesis (1)
Awards and Grants
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Mar 2007Blue Obelisk Award View website
Biographical Information
Egon Willighagen studied Chemistry at the University of Nijmegen in
the Netherlands (1993-2001) with a major in chemometrics at the
Deparment of Analytical Chemistry (Prof. L.M.C. Buydens) studying the
unsupervised classfication of polymorphic organic crystal structures.
He continued his studies in the same group on the relation of
representation of molecular knowledge and machine learning during his
PhD (ISBN:978-90-9022806-8). Taking advantage of his extra-curriculum
research in (open source) cheminformatics, he worked on on methods to
optimize the amount of information gained from pattern recognition
methods in the fields of Quantitative Structure-Activity Relationships
(QSAR), supervised clustering and prediction of properties of organic
crystal structures, the general reduction of error introduced in
exchange of chemical data, and on improving the reproducibility of
data analysis in this field in general. This research was partly
performed at the European Bioinformatics Institute (Prof. J. Thornton)
and the University of Cambridge (Prof. P. Murray-Rust). After his PhD
research he continued his efforts on reducing the error introduced by
data aggregation and cheminformatics toolkits with postdoctoral
research in Cologne (dr C. Steinbeck), and Wageningen University and
the Netherlands Metabolomics Center (dr. R. Van Ham) in the area of
metabolite identification, and after that in proteochemometrics at
Uppsala University (Prof. J. Wikberg). After a short project in text
mining for chemistry back at the University of Cambridge (Prof. P.
Murray-Rust), Willighagen started in 2011 a post-doc at the Institute
of Environmental Medicine of the Karolinska Intitute (Prof. B. Fadeel,
and Prof. R. Grafström) working on applications of cheminformatic in
toxicology. Willighagen is editorial member for two journals in the
field cheminformatics and scientific computing, and member of advisory
boards of various international organisations, and has been awarded
for his contributions to open science in cheminformatics.
the Netherlands (1993-2001) with a major in chemometrics at the
Deparment of Analytical Chemistry (Prof. L.M.C. Buydens) studying the
unsupervised classfication of polymorphic organic crystal structures.
He continued his studies in the same group on the relation of
representation of molecular knowledge and machine learning during his
PhD (ISBN:978-90-9022806-8). Taking advantage of his extra-curriculum
research in (open source) cheminformatics, he worked on on methods to
optimize the amount of information gained from pattern recognition
methods in the fields of Quantitative Structure-Activity Relationships
(QSAR), supervised clustering and prediction of properties of organic
crystal structures, the general reduction of error introduced in
exchange of chemical data, and on improving the reproducibility of
data analysis in this field in general. This research was partly
performed at the European Bioinformatics Institute (Prof. J. Thornton)
and the University of Cambridge (Prof. P. Murray-Rust). After his PhD
research he continued his efforts on reducing the error introduced by
data aggregation and cheminformatics toolkits with postdoctoral
research in Cologne (dr C. Steinbeck), and Wageningen University and
the Netherlands Metabolomics Center (dr. R. Van Ham) in the area of
metabolite identification, and after that in proteochemometrics at
Uppsala University (Prof. J. Wikberg). After a short project in text
mining for chemistry back at the University of Cambridge (Prof. P.
Murray-Rust), Willighagen started in 2011 a post-doc at the Institute
of Environmental Medicine of the Karolinska Intitute (Prof. B. Fadeel,
and Prof. R. Grafström) working on applications of cheminformatic in
toxicology. Willighagen is editorial member for two journals in the
field cheminformatics and scientific computing, and member of advisory
boards of various international organisations, and has been awarded
for his contributions to open science in cheminformatics.
CV
Professional Experience
2012 - Present
Jan 2011 - Dec 2011
Oct 2010 - Dec 2010
postdoctoral research associate at Chemistry Department, University of Cambridge
Cambridge, United Kingdom
Cambridge, United Kingdom
Oct 2008 - Sep 2010
post-doc at Uppsala Universtiy
Uppsala, Sweden
Classes taught:
Cheminformatics Journal Club
Pharmaceutical Bioinformatics
Uppsala, Sweden
Classes taught:
Cheminformatics Journal Club
Pharmaceutical Bioinformatics
Jun 2007 - Aug 2008
post-doc at Plant Research International - Wageningen University & Research Center
Wageningen, Netherlands
Wageningen, Netherlands
Apr 2006 - Mar 2007
post-doc at Cologne University
Cologne, Germany
Classes taught:
Cheminformatics
Homology Modeling
Cologne, Germany
Classes taught:
Cheminformatics
Homology Modeling
Education
Dec 2001 - Apr 2008
Sep 1993 - Nov 2001
Contact Information
| Webpage: | egonw.github.com/ |
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