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Hilmar Lapp

Assistant Director for Informatics, National Evolutionary Synthesis Center (NESCent)
Durham, North Carolina, United States

Research field: Biological Sciences - Bioinformatics
Reusable and interoperable software, data, and semantics;
Large-scale data integration; Cyberinfrastructure for biology; Building sustainable communities

Publications

Biographical Information

My research interests are in reusable and interoperable software and data, large-scale data integration, and in building open, sustainable eScience infrastructure. While a biologist by training, I have been programming for almost three decades, from building commercial applications to writing real-time data acquisition software, to developing bioinformatics data integration systems and standards.

In my role at NESCent, I am involved with and have helped initiate many of the Center’s cyberinfrastructure initiatives aimed at grass-roots building of community capacity. I brought the hackathon program and Google Summer of Code participation to the Center. I also serve in senior roles in the NSF-funded Phenoscape project (http://phenoscape.org) on ontological annotation of evolutionary phenotype observations, as well as the Dryad digital repository for data supporting scientific publications (http://datadryad.org). Before joining NESCent, I worked for almost 10 years in functional genome informatics in the biopharmaceutical sector, where among other things I built SymAtlas, one of the first decidedly gene-centric database integrating genome annotation databases with gene function data.

I have also been been a long-time advocate of open-source and open development of software. Software I write is free for everyone to reuse, modify, and redistribute. I am convinced that the Future of Science is Open, including the open sharing and reuse of all scholarly inputs and outputs, and that the scholarly communication process works best for science if conducted as openly as possible. I aspire to practice this conduct whenever I can, including publishing in open-access journals, and signing my peer reviews, whether positive or negative.

CV

Professional Experience


2012 - Present
President at Open Bioinformatics Foundation (OBF)
Cambridge, Massachusetts, United States
2006 - Present
Assistant Director for Informatics at National Evolutionary Synthesis Center (NESCent)
Durham, North Carolina, United States
2001 - Present
Member, Board of Directors at Open Bioinformatics Foundation (OBF)
Cambridge, Massachusetts, United States
Dec 2010 - Dec 2012
Member, Organizing Committee at iEvoBio
Portland, Oregon, United States
Sep 2001 - Apr 2006
Bioinformatics Group Leader at Genomics Institute of the Novartis Research Foundation
San Diego, California, United States
May 1997 - Jul 2001
Bioinformatics Research Associate and Lab Head, Computational Biology & Data Mining at Novartis Research Institute
Vienna, Austria
Education


Oct 1988 - Jan 1997
Institute of Biology II, Albert-Ludwigs-University Freiburg in Freiburg, Germany
Dipl. Biology (M.Sc.)
Sep 1985 - Jun 1987
Department of Biology, Lüdwig-Maximilians University Munich in Munich, Germany
Vordiplom (BS)

Destinations

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Durham, North Carolina, United States
Main City

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