Hilmar Lapp
Durham, North Carolina, United States
Research field: Biological Sciences - Bioinformatics
Reusable and interoperable software, data, and semantics;
Large-scale data integration; Cyberinfrastructure for biology; Building sustainable communities
Publications
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Journal Article (26)
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Allen Rodrigo, Susan Alberts, Karen Cranston et al. (2013) Science Incubators: Synthesis Centers and Their Role in the Research Ecosystem, e1001468. In PLoS Biology 11 (1).Download PDF (119.64 KB)
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P. Mabee, J. P. Balhoff, W. M. Dahdul et al. (2012) 500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton, 300-305. In Journal of Applied Ichthyology 28 (3).Download PDF (241.6 KB)
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Wasila M Dahdul, James P Balhoff, David C Blackburn et al. (2012) A Unified Anatomy Ontology of the Vertebrate Skeletal System, e51070. In PLoS ONE 7 (12).Download PDF (2.59 MB)
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Rutger A Vos, James P Balhoff, Jason A Caravas et al. (2012) NeXML: rich, extensible, and verifiable representation of comparative data and metadata., 1-52. In Systematic Biology.Download PDF (462.61 KB)
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Robert J. Robbins, Linda Amaral-Zettler, Holly Bik et al. (2012) RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011, 159-165. In Standards in Genomic Sciences 7 (1).Download PDF (216.73 KB)
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Andreas Prlić, Hilmar Lapp (2012) The PLOS Computational Biology Software Section, e1002799. In PLoS Computational Biology 8 (11).Download PDF (144.33 KB)
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Hilmar Lapp, Robert A Morris, Terry Catapano et al. (2011) Organizing Our Knowledge of Biodiversity, 38-42. In ASIST Bulletin 37 (4).Download PDF (164.62 KB)
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Christine E Wall, Christopher J Vinyard, Susan H Williams et al. (2011) Overview of FEED, the Feeding Experiments End-user Database., 215-223. In Integrative and Comparative Biology 51 (2).Download PDF (352.2 KB)
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Sook Jung, Naama Menda, Seth Redmond et al. (2011) The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data, bar051. In Database.Download PDF (326.39 KB)
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Wasila M. Dahdul, James P. Balhoff, Jeffrey Engeman et al. (2010) Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature, e10708. In PLoS ONE 5 (5).Download PDF (369.6 KB)
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Book (1)
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Arlin Stoltzfus, Hilmar Lapp, Naim Matasci et al. (2013) Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient, 158. 14 (1).Download PDF (671.39 KB)
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Conference Proceedings (2)
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T. Vision, Judith Blake, Hilmar Lapp et al. (2011) Similarity between semantic description sets: addressing needs beyond data integration. In Proceedings of the First International Workshop on Linked Science (LISC 2011).Download PDF (137.75 KB)
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N. Brändle, H.Y. Chen, Horst Bischof et al. (2000) Robust Parametric and Semi-parametric Spot Fitting for Spot Array Images, 46–56. In Proc Int Conf Intell Syst Mol Biol.Download PDF (499.07 KB)
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Biographical Information
My research interests are in reusable and interoperable software and data, large-scale data integration, and in building open, sustainable eScience infrastructure. While a biologist by training, I have been programming for almost three decades, from building commercial applications to writing real-time data acquisition software, to developing bioinformatics data integration systems and standards.
In my role at NESCent, I am involved with and have helped initiate many of the Center’s cyberinfrastructure initiatives aimed at grass-roots building of community capacity. I brought the hackathon program and Google Summer of Code participation to the Center. I also serve in senior roles in the NSF-funded Phenoscape project (http://phenoscape.org) on ontological annotation of evolutionary phenotype observations, as well as the Dryad digital repository for data supporting scientific publications (http://datadryad.org). Before joining NESCent, I worked for almost 10 years in functional genome informatics in the biopharmaceutical sector, where among other things I built SymAtlas, one of the first decidedly gene-centric database integrating genome annotation databases with gene function data.
I have also been been a long-time advocate of open-source and open development of software. Software I write is free for everyone to reuse, modify, and redistribute. I am convinced that the Future of Science is Open, including the open sharing and reuse of all scholarly inputs and outputs, and that the scholarly communication process works best for science if conducted as openly as possible. I aspire to practice this conduct whenever I can, including publishing in open-access journals, and signing my peer reviews, whether positive or negative.
In my role at NESCent, I am involved with and have helped initiate many of the Center’s cyberinfrastructure initiatives aimed at grass-roots building of community capacity. I brought the hackathon program and Google Summer of Code participation to the Center. I also serve in senior roles in the NSF-funded Phenoscape project (http://phenoscape.org) on ontological annotation of evolutionary phenotype observations, as well as the Dryad digital repository for data supporting scientific publications (http://datadryad.org). Before joining NESCent, I worked for almost 10 years in functional genome informatics in the biopharmaceutical sector, where among other things I built SymAtlas, one of the first decidedly gene-centric database integrating genome annotation databases with gene function data.
I have also been been a long-time advocate of open-source and open development of software. Software I write is free for everyone to reuse, modify, and redistribute. I am convinced that the Future of Science is Open, including the open sharing and reuse of all scholarly inputs and outputs, and that the scholarly communication process works best for science if conducted as openly as possible. I aspire to practice this conduct whenever I can, including publishing in open-access journals, and signing my peer reviews, whether positive or negative.
CV
Professional Experience
2012 - Present
2006 - Present
Assistant Director for Informatics at National Evolutionary Synthesis Center (NESCent)
Durham, North Carolina, United States
Durham, North Carolina, United States
2001 - Present
Member, Board of Directors at Open Bioinformatics Foundation (OBF)
Cambridge, Massachusetts, United States
Cambridge, Massachusetts, United States
Dec 2010 - Dec 2012
Sep 2001 - Apr 2006
Bioinformatics Group Leader at Genomics Institute of the Novartis Research Foundation
San Diego, California, United States
San Diego, California, United States
May 1997 - Jul 2001
Bioinformatics Research Associate and Lab Head, Computational Biology & Data Mining at Novartis Research Institute
Vienna, Austria
Vienna, Austria
Education
Oct 1988 - Jan 1997
Institute of Biology II, Albert-Ludwigs-University Freiburg
in Freiburg, Germany
Dipl. Biology (M.Sc.)
Dipl. Biology (M.Sc.)
Sep 1985 - Jun 1987
Department of Biology, Lüdwig-Maximilians University Munich
in Munich, Germany
Vordiplom (BS)
Vordiplom (BS)
Public Groups
Public groups Hilmar is a member of
Public groups Hilmar is following
Destinations
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