Ramy Aziz, Ph.D.'s Publications

Ramy K Aziz, Bhakti Dwivedi, Mya Breitbart, Robert A Edwards (2011) Phage Eco-Locator: a web tool for visualization and analysis of phage genomes in metagenomic data sets, A9. In BMC Bioinformatics 12 (Suppl 7).

Ramy K Aziz, Rama Saad, Mariam R Rizkallah (2011) PharmacoMicrobiomics or how bugs modulate drugs: an educational initiative to explore the effects of human microbiome on drugs, A10. In BMC Bioinformatics 12 (Suppl 7).

Ahmed Mahmoud, Ramy Aziz (2010) Do pathogenic bacteria encode more secreted proteins than their non-pathogenic relatives?, P28. In BMC Bioinformatics 11 (Suppl 4).

Ramy Aziz (2010) In silico analysis of a family of extracellular polysaccharide deacetylases involved in virulence of pathogenic gram-positive cocci, P8. In BMC Bioinformatics 11 (Suppl 4).

Ramy K Aziz, Bruce J Aronow, William L Taylor, Sarah L Rowe, Rita Kansal, Mark J Walker, Malak Kotb (2010) Integrating neighbor clustering, coexpression clustering and subsystems analysis to define dynamic changes in regulatory networks associated with group A streptococcal sociomicrobiology and niche adaptation, P12. In BMC Bioinformatics 11 (Suppl 4).

Ramy Aziz (2010) Subsystems-based servers for rapid annotation of genomes and metagenomes, O2. In BMC Bioinformatics 11 (Suppl 4).

Heba M Amin, Abdel-Gawad M Hashem, Ramy K Aziz (2009) Bioinformatics determination of ETEC signature genes as potential targets for molecular diagnosis and reverse vaccinology, A8. In BMC Bioinformatics 10 (Suppl 7).

Ramy K Aziz, Leslie K Mcneil (2009) Reconstructing the virulome of the human pathogen Streptococcus pyogenes using NMPDR subsystems-based annotation, A7. In BMC Bioinformatics 10 (Suppl 7).

Mahdy, K. A.; Aziz M., K.; Shoeb R., A. H. (2008) Endemic Gastric Disorders Linked to Groundwater Contamination with Helicobacter pylori in an Egyptian Oasis. In Abstracts of the General Meeting of the American Society for Microbiology.

Aziz, K.; Taylor R., L.; Kansal W., R. (2008) Phenotypic Microarrays and In Vivo Transcriptome Analysis Reveal Molecular and Regulatory Events Underlying Niche-Adaptation of M1T1 S. pyogenes. In Abstracts of the General Meeting of the American Society for Microbiology.

Abdeltawab, Aziz N.;, Kansal R.;, R. (2007) Mapping genetic loci modulating host response and severity of group a Streptococcal sepsis, 269-270. In Abstracts of the General Meeting of the American Society for Microbiology.

Aziz, K.; Kansal R., Abdeltawab R.;, N. (2006) A genetically diverse mouse reference population to study the mechanism of susceptibility of streptococcal infections. In Abstracts of the General Meeting of the American Society for Microbiology.

Abdeltawab, Aziz N.;, K.; Kansal R., R. (2006) Bioinformatics mapping of genetic loci modulating variable host response to group A streptococcal (GAS) infections. In Abstracts of the General Meeting of the American Society for Microbiology.

Ramy K. Aziz, Malak Kotb (2006) Integrating proteomics, genomics, and bioinformatics tools to define unique features of the clonal M1T1 strain of Streptococcus pyogenes, 175-179. In International Congress Series.

Aziz, K.; Edwards R., A.; Taylor R., W. W. (2005) Mosaic prophages with horizontally acquired genes account for the emergence and diversification of the globally disseminated M1T1 clone of S-pyogenes. In Abstracts of the General Meeting of the American Society for Microbiology.

Aziz, K.; Kotb R., M. (2004) Proteomic and genomic identification of two novel bacteriophages encoding important virulence proteins in invasive M1T1 S-pyogenes. In Abstracts of the General Meeting of the American Society for Microbiology.

Aziz, K.; Nizet R., Pabst V.;, M. (2003) Comparative proteomic analysis of immunogenic proteins secreted by isogenic Streptococcus pyogenes phase variants before and after in vivo passage.. In Abstracts of the General Meeting of the American Society for Microbiology.

Aziz, K.; Kotb R., Y. M. (2003) Post-proteomic analysis of the S. pyogenes M1T1 secreted proteins shows the introduction of 2 phages into this strain and identifies a novel phage-encoded deoxyribonuclease.. In Abstracts of the Interscience Conference on Antimicrobial Agents and Chemotherapy.

Kansal, G.; Aziz R., K.; Kotb R., M. (2002) Human peripheral blood mononuclear cells provide a signal that triggers the expression of the Streptococcal pyrogenic exotoxin A (SpeA) gene. In Abstracts of the General Meeting of the American Society for Microbiology.

Aziz, K.; Pabst R., Hettich M.;, R. (2002) Proteomic analysis of streptococcal secreted proteins expressed in vivo by isogenic strains of S. pyogenes with different superantigen expression profiles. In Abstracts of the General Meeting of the American Society for Microbiology.