Rutger Vos, Bioinformaticist

Bioinformaticist, NCB Naturalis
Leiden, Netherlands

Research field: Biological Sciences - Bioinformatics
phyloinformatics, phylogenomics, interoperability, data standards, software engineering

Publications

Journal Article (14)
- Raoul J.P. Bonnal, Jan Aerts, George Githinji et al. (2012) Biogem: an effective tool based approach for scaling up open source software development in bioinformatics. In Bioinformatics.
  http://bioinformatics.oxfordjournals....
  http://bioinformatics.oxfordjournals....
  
  Download PDF (464.33 KB)
- Rutger A. Vos, James P. Balhoff, Jason A. Caravas et al. (2012) NeXML: rich, extensible, and verifiable representation of comparative data and metadata. In Systematic Biology.
  http://sysbio.oxfordjournals.org/cont...
  http://sysbio.oxfordjournals.org/cont...
  
  Download PDF (692.91 KB)
- Rutger A. Vos, Jason Caravas, Klaas Hartmann et al. (2011) BIO::Phylo-phyloinformatic analysis using perl.. In BMC bioinformatics 12 (1).
  http://www.ncbi.nlm.nih.gov/pmc/artic...
- J Mark Hipfner, Kristen Gorman, Rutger Aldo Vos et al. (2010) Evolution of embryonic developmental period in the marine bird families Alcidae and Spheniscidae: roles for nutrition and predation?. In BMC Evolutionary Biology 10 (1).
- Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao et al. (2010) The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.. In Journal of biomedical semantics 1 (8).
  http://www.ncbi.nlm.nih.gov/pmc/artic...
- Rutger A. Vos, Hilmar Lapp, William H. Piel et al. (2010) TreeBASE2: Rise of the Machines. In Nature Precedings.
  http://precedings.nature.com/document...
- Hilmar Lapp, Sendu Bala, James P. Balhoff et al. (2007) The 2006 NESCent Phyloinformatics Hackathon: A Field Report, 287-296. In Evolutionary Bioinformatics.
- Olaf R. P. Bininda-Emonds, Marcel Cardillo, Kate E. Jones et al. (2007) The delayed rise of present-day mammals, 507-512. In Nature 446 (7135).
- E.J. de Vries, R.A. Vos, G. Jacobs et al. (2006) Western flower thrips (Thysanoptera: Thripidae) preference for thrips-damaged leaves over fresh leaves enables uptake of symbiotic gut bacteria, 779-786. In European Journal of Entomology 103 (4).
- A Mooers, Rutger Aldo Vos (2005) The Shapes of Phylogenies. In Mathematics of Evolution and Phylogeny.
- See all
Generic (3)
- A. Stoltzfus, R.A. Vos, J. Reese et al. (2006) Bio::CDAT - An Object for Evolutionary Analysis of Data.
- Tanja Gernhard, Daniel Ford, Rutger Aldo Vos et al. (2006) Estimating the relative order of speciation or coalescence events on a given phylogeny, 309-317..
  http://la-press.com/journals.php?pa=a...
  http://arxiv.org/abs/math/0610840
  http://arxiv.org/pdf/math/0610840
- D.H.J. Wong, R.A. Vos, Arne O. Mooers (2003) Supertree for the Geomyoids (Mammalia: Rodentia, Geomyoidea).
Book Section (1)
- R. A. Vos, Arne Ø. Mooers (2004) Reconstructing divergence times for supertrees: a molecular approach., 281-299..
  http://www.sfu.ca/~amooers/papers/Vos...
Conference Proceedings (3)
- Hilmar Lapp, Arlin Stoltzfus, Todd J Vision et al. (2009) Evolutionary Data Leaping to Web 3.0: Some Highlights From NESCent's Third Hackathon.
- William H. Piel, Lucie Chan, Mark J. Dominus et al. (2009) TreeBASE v. 2: A Database of Phylogenetic Knowledge.
- Rutger Aldo Vos (2008) Data standards in phylogenetics: the NeXML project.
  http://www.tdwg.org/proceedings/artic...

Awards and Grants

No awards or grants added yet.

Biographical Information

I am a bioinformaticist at NCB Naturalis, a contributor to various open source software projects and I keep myself busy thinking about computational biology, phylogenetics and evolution.