Small pelagics and fish modelling

Individual Based Models (IBM's), anchovy, sardine, sadinella, essential fish habitats, GIS, GAM, GLM.
Created by Andres Ospina-Alvarez
View this collection on Mendeley
Stage-dependent vertical distribution of pelagic fish eggs on the western Agulhas Bank, South Africa Stage-dependent vertical distribution of pelagic fish eggs on the western Agulhas Bank, South Africa
MT Dopolo, CD van Der Lingen, CL Moloney (2005)
African Journal of Marine Science 27 (1) p. 249 - 256
http://pdfserve.informaworld.com/284371_788671212_918425496.pdf
Fish Reproductive Biology: Implications for Assessment and Management
T Jakobsen, MJ Fogarty, BA Megrey, E. Moksness (2009)
Wiley-Blackwell
http://books.google.com/books?hl=en&lr=&id=-0Co8nrLVxUC&oi=fnd&pg=PT9&a...
Buoyancy and vertical distribution of eggs and larvae of blue whiting (Micromesistius poutassou): observations and modelling
B Ådlandsvik (2001)
Fisheries Research 50 (1-2) p. 59-72
http://dx.doi.org/10.1016/S0165-7836(00)00242-3
Influence of buoyancy and vertical distribution of sardine Sardinops sagax eggs and larvae on their transport in the northern Benguela ecosystem
E.K. Stenevik, S. Sundby, R. Cloete (2001)
South African Journal of Marine Science 23 (1) p. 13
http://www.ingentaconnect.com/content/nisc/sajms/2001/00000023/00000001/art00007
Larval growth of anchovy, Engraulis encrasicolus, in the Western Mediterranean Sea
I Palomera, B. Morales-Nin, J. Lleonart (1988)
Marine Biology 99 (2) p. 283-291
http://www.springerlink.com/index/G183H0KP6P66231U.pdf
Field mortality estimates of anchovy larvae, Engraulis encrasicolus, in the western Mediterranean
I Palomera, J Lleonart (1989)
Journal of Fish Biology 35 (Suppl. A) p. 133-138
Trophic ecology of the Europen anchovy Engraulis encrasicolus in the Catalan Sea (northwest Mediterranean)
Sergi Tudela, I Palomera (1997)
Marine Ecology Progress Series 160 p. 121-134
Comparative study of spatial distribution patterns of the early stages of anchovy and pilchard in the NW Mediterranean Sea
M P Olivar, J Salat, I Palomera (2001)
Marine Ecology Progress Series 217 p. 111-120
http://www.int-res.com/abstracts/meps/v217/p111-120/
Physical and biological processes controlling the distribution of fish larvae in the NW Mediterranean
A Sabatés, M P Olivar, J Salat, I Palomera, F Alemany (2007)
Progress in Oceanography 74 (2-3) p. 355-376
http://linkinghub.elsevier.com/retrieve/pii/S0079661107000638
Advection of anchovy (Engraulis encrasicolus) larvae along the Catalan continental slope (NW Mediterranean)
A. Sabatés, J. Salat, I Palomera, M. Emelianov, M. L. Fernández De Puelles, M. P. Olivar (2007)
Fisheries Oceanography 16 (2) p. 130-141
http://www.blackwell-synergy.com/doi/abs/10.1111/j.1365-2419.2006.00416.x
Ecosystem overfishing in the ocean.
Marta Coll, Simone Libralato, Sergi Tudela, I Palomera, Fabio Pranovi (2008)
PLoS ONE 3 (12) p. e3881
http://www.ncbi.nlm.nih.gov/pubmed/19066624
Growth and feeding patterns of European anchovy (Engraulis encrasicolus) early life stages in the Aegean Sea (NE Mediterranean)
Ignacio A. Catalán, Arild Folkvord, I Palomera, Gemma Quílez-Badía, Fotini Kallianoti, Anastasios Tselepides, Argyris Kallianotis (2010)
Estuarine Coastal and Shelf Science 86 (2) p. 299-312
http://linkinghub.elsevier.com/retrieve/pii/S0272771409005599
Is dispersal of fish eggs, embryos and larvae an insurance against density dependence?
Alcibiades Economou (1991)
Environmental Biology of Fishes 31 (4) p. 313-321
http://dx.doi.org/10.1007/BF00002356
Spatial patterns and GIS habitat modelling of fish in two French Mediterranean coastal areas
Romain Crec'hriou, Patrick Bonhomme, Géraldine Criquet, Gwenaêl Cadiou, Philippe Lenfant, Guillaume Bernard, Erwan Roussel, Laurence Diréach, Serge Planes (2008)
Essential Fish Habitat Mapping in the Mediterranean p. 135-153
http://dx.doi.org/10.1007/978-1-4020-9141-4_11
Vertical distribution of early developmental stages in two coexisting clupeoid species, Sardinella aurita and Engraulis encrasicolus
A Sabatés, N Zaragoza, C Grau, J Salat (2008)
Mar Ecol Prog Ser 364 p. 169-180
European anchovy (Engraulis encrasicolus) landings and environmental conditions on the Catalan Coast (NW Mediterranean) during 2000--2005
P Martín, N Bahamon, A Sabatés, F Maynou, P Sánchez, M Demestre (2008)
Hydrobiologia 612 (1) p. 185-199
Specific gravity and vertical distribution of sprat eggs in the Baltic Sea
A Nissling, A Muller, H H Hinrichsen (2003)
Journal of Fish Biology 63 (2) p. 280-299
Pelagic spawning and egg transport in coral-reef fishes: a skeptical overview
D Y Shapiro, D A Hensley, R S Appeldoorn (1988)
Environmental Biology of Fishes 22 (1) p. 3-14
Control mechanisms of diel vertical migration: theoretical assumptions
B P Han, M STRAŠKRABA (2001)
Journal of Theoretical Biology 210 (3) p. 305-318
Modelling the vertical distribution of eggs of anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus)
G Boyra, L Rueda, S H Coombs, S Sundby, B Adlandsvik, M Santos, A Uriarte (2003)
Fisheries Oceanography 12 (4-5) p. 381-395
Osmoregulation, nutritional effects and buoyancy of marine larval fish: a bioassay for assessing density changes during the earliest life-history stages
M Sclafani, G Stirling, W C Leggett (1997)
Marine Biology 129 (1) p. 1-9
One-dimensional biophysical modelling of fish egg vertical distributions in shelf seas
P Petitgas, S Magri, P Lazure (2006)
Fisheries Oceanography 15 (5) p. 413
A continuous, underway fish egg sampler
D Checkley Jr, P Ortner, L Settle (1997)
Fisheries Oceanography
http://www3.interscience.wiley.com/journal/119176777/abstract
Reproductive strategies of coastal marine fishes in the tropics
R E Johannes (1978)
Environmental Biology of Fishes 3 (1) p. 65-84
Fitting Models to Biological Data using Linear and Nonlinear Regression
Harvey Motulsky, Arthur Christopoulos (2003)
GraphPad Software, San Diego CA p. 1-351
Anchovy egg and larval distribution in relation to biological and physical oceanography in the Strait of Sicily
A Cuttitta, V Carini, B Patti, A Bonanno, G Basilone, S Mazzola, J García Lafuente, A García, G Buscaino, L Aguzzi (2003)
Hydrobiologia 503 (1) p. 117-120
http://www.google.com/search?client=safari&rls=es-es&q=Anchovy+egg+and+larval+distribut...
Plaice eggs (Pleuronectes platessa L.) in the southern North Sea: abundance, spawning area, vertical distribution, and buoyancy
S H Coombs, J H Nichols, C A Fosh (1990)
ICES Journal of Marine Science 47 (2) p. 133
Assessment of an environmental barrier to transport of ichthyoplankton from the southern to the northern Benguela ecosystems
C Lett, J Veitch, C D Van Der Lingen, L Hutchings (2007)
Mar Ecol Prog Ser 347 p. 247-259
Ambient sound as a cue for navigation by the pelagic larvae of reef fishes
N Tolimieri, A Jeffs, J C Montgomery (2000)
Mar Ecol Prog Ser 207 p. 219-224
Modeling the primary and secondary productions of the southern Benguela upwelling system: A comparative study through two biogeochemical models
V Koné, E Machu, P Penven, V Andersen, V Garcon, P Fréon, H Demarcq (2005)
Global Biogeochemical Cycles 19 (4)
Preface: European Commission's' scientific Support to Policies' Action EnviEFH: Environmental Approach to Essential Fish Habitat Designation
Vasilis Valavanis (2008)
Essential Fish Habitat Mapping in the Mediterranean p. 1-3
http://dx.doi.org/10.1007/978-1-4020-9141-4_1
Relationships between anchovy (Engraulis encrasicolus) recruitment and environment in the Bay of Biscay (1967-1996)
A Borja, A Uriarte, J Egana, L Motos, V Valencia (1998)
Fisheries Oceanography 7 (3-4) p. 375-380
Water balance in developing eggs of the cod Gadus morhua L
A Mangor-Jensen (1987)
Fish physiology and biochemistry 3 (1) p. 17-24
Eco-genetic model to explore fishing-induced ecological and evolutionary effects on growth and maturation schedules
H Wang, T Höök (2009)
Evolutionary Applications 2 (3) p. 438-455
http://www3.interscience.wiley.com/journal/122528079/abstract
Observations in ecology: you can't make progress on processes without understanding the patterns
A J Underwood, M G Chapman, S D Connell (2000)
Journal of Experimental Marine Biology and Ecology 250 (1-2) p. 97-115
Wave-and current-induced bottom shear stress distribution in the Gulf of Lions
F Dufois, P Garreau, P Le Hir, P Forget (2008)
Continental Shelf Research
http://linkinghub.elsevier.com/retrieve/pii/S0278434308001283
Beta and habitat diversity in marine systems: a new approach to measurement, scaling and interpretation
P J Mumby (2001)
Oecologia 128 (2) p. 274-280
Distribution, growth and survival of anchovy larvae (Engraulis encrasicolus L.) in relation to hydrodynamic and trophic environment in the Bay of Biscay
U Cotano, X Irigoien, E Etxebeste, P Alvarez, L Zarauz, J Mader, L Ferrer (2008)
Journal of Plankton Research 30 (4) p. 467
The Hellenic Seas: physics, chemistry, biology and fisheries
K I Stergiou, E D Christou, D Georgopoulos, A Zenetos, C Souvermezoglou (1997)
Oceanography and Marine Biology 35 p. 415-538
Les reserves lipidiques de l'oeuf des poissons
J Mellinger (1995)
Année biologique 34 (2) p. 63-90
Traducci{ó}n al espa{ñ}ol de los t{é}rminos ingleses m{á}s conflictivos utilizados en Etolog{í}a, Ecolog{í}a y Evoluci{ó}n
M Soler, J Carranza, A Cordero Rivera, J Moreno, J C Senar, J J Soler (2001)
Etolog{í}a 9 p. 43-46
Linking habitat conditions and growth in the European anchovy (Engraulis encrasicolus)
G Basilone, C Guisande, B Patti, S Mazzola, A Cuttitta, A Bonanno, A Kallianiotis (2004)
Fisheries Research 68 (1-3) p. 9-19
Modelling potential spawning habitat of sardine (Sardina pilchardus) and anchovy (Engraulis encrasicolus) in the Bay of Biscay
B Planque, E Bellier, P Lazure (2007)
Fisheries Oceanography 16 (1) p. 16-30
Importance of spawning location and timing to successful transport to nursery areas: a simulation study of Gulf of Alaska walleye pollock
S Hinckley, A J Hermann, K L Mier, B A Megrey (2001)
ICES Journal of Marine Science 58 (5) p. 1042
Diel vertical migration of zooplankton and mesopelagic fish in the Arabian Sea
J Luo, P B Ortner, D Forcucci, S R Cummings (2000)
Deep-Sea Research Part II 47 (7-8) p. 1451-1473
Salinity and temperature as factors controlling the spawning and catch of Parapenaeus longirostris along the Moroccan Atlantic Ocean
Said Benchoucha, Abdellatif Berraho, Hocein Bazairi, Isidora Katara, Salah Benchrifi, Vasilis Valavanis (2008)
Essential Fish Habitat Mapping in the Mediterranean p. 109-123
http://dx.doi.org/10.1007/978-1-4020-9141-4_9
Influence of some physical and biological factors on the density and vertical distribution of Atlantic halibut Hippoglossus hippoglossus eggs
T Haug, E Kjorsvik, P Solemdal (1986)
Mar Ecol Prog Ser 33 p. 207-216
http://www.google.com/search?client=safari&rls=es-es&q=Influence+of+some+physical+and+b...
A Lagrangian tool for modelling ichthyoplankton dynamics
C Lett, P Verley, C Mullon, C Parada, T Brochier, P Penven, B Blanke (2008)
Environmental Modelling and Software
Enrichment, concentration and retention processes in relation to anchovy (Engraulis ringens) eggs and larvae distributions in the northern Humboldt upwelling ecosystem
C Lett, P Penven, P Ayón, P Fréon (2007)
Journal of Marine Systems 64 (1-4) p. 189-200
Simulation of mackerel (Scomber scombrus) recruitment with an individual-based model and comparison with field data
J Bartsch, D Reid, S H Coombs (2004)
Fisheries Oceanography 13 (6) p. 380-391
Tropical Seabird Biology
Ralph W Schreiber (1984)
Studies in Avian Biology 8
http://books.google.com/books?id=e08XAQAAIAAJ
Diffuse attenuation coefficients Kd (PAR) at the estuarine North Sea--Baltic Sea transition: time-series, partitioning, absorption, and scattering
L C Lund-Hansen (2004)
Estuarine, Coastal and Shelf Science 61 (2) p. 251-259
Vertical distribution of pelagic fish eggs in relation to species, spawning behaviour and wind conditions
P Solemdal, S Sundby (1981)
ICES CM p. 1-27
Combining GIS and GAMs to identify potential habitats of squid Loligo vulgaris in the Northwestern Mediterranean
P Sanchez, M Demestre, L Recasens, F Maynou, P Martin (2008)
Hydrobiologia 612 (1) p. 91-98
Estimating the species accumulation curve using mixtures
C X Mao, R K Colwell, J Chang (2005)
Biometrics 61 (2) p. 433-441
Identifying essential fish habitat for small pelagic species in Spanish Mediterranean waters
J M Bellido, A M Brown, V D Valavanis, A Giráldez, G J Pierce, M Iglesias, A Palialexis (2008)
Hydrobiologia 612 (1) p. 171-184
Life history change in commercially exploited fish stocks: an analysis of trends across studies
D Sharpe, A Hendry (2009)
Evolutionary Applications 2 (3) p. 260-275
http://biology.mcgill.ca/grad/diana/articles/SharpeHendry_09.pdf
Connectivity of marine populations: open or closed?
R Cowen, K Lwiza, S Sponaugle, C Paris (2000)
Science 287 p. 857-859
http://www.sciencemag.org/cgi/content/abstract/287/5454/857
Spatial autocorrelation and autoregressive models in ecology
J W Lichstein, T R Simons, S A Shriner, K E Franzreb (2002)
Ecological Monographs 72 (3) p. 445-463
The influence of spatio-temporal egg production variability on the modelled survival of the early life history stages of mackerel (Scomber scombrus) in the eastern North Atlantic
J Bartsch (2005)
ICES Journal of Marine Science 62 (6) p. 1049
Influences of environmental variability on the population structure and distribution patterns of the short-fin squid Illex coindetii (Cephalopoda: Ommastrephidae) in the Eastern Ionian Sea
Eugenia Lefkaditou, Chrissi-Yianna Politou, Andreas Palialexis, John Dokos, Panayota Cosmopoulos, Vasilis Valavanis (2008)
Essential Fish Habitat Mapping in the Mediterranean p. 71-90
http://dx.doi.org/10.1007/978-1-4020-9141-4_6
Small pelagic fish reproductive strategies in upwelling systems: A natal homing evolutionary model to study environmental constraints
T Brochier, F Colas, C Lett, V Echevin, L A Cubillos, J Tam, M Chlaida, C Mullon, P Fréon (2009)
Progress in Oceanography
http://www.google.com/search?client=safari&rls=es-es&q=Small+pelagic+fish+reproductive+...
A standard protocol for describing individual-based and agent-based models
V Grimm, U Berger, F Bastiansen, S Eliassen, V Ginot, J Giske, J Goss-Custard, T Grand, S K Heinz, G Huse (2006)
Ecological Modelling 198 (1-2) p. 115-126
Compensatory density dependence in fish populations: importance, controversy, understanding and prognosis
K A Rose, J H Cowan, K O Winemiller, R A Myers, R Hilborn (2001)
FISH and FISHERIES 2 (4) p. 293-327
Contribution of individual-based coupled physical-biological models to understanding recruitment in marine fish populations
T J Miller (2007)
Mar Ecol Prog Ser 347 p. 127-138
Effects of environmental changes on early stages and reproduction of anchovy in the Adriatic Sea
S Regner (1996)
Scientia Marina 60 p. 167-177
From particles to individuals: modelling the early stages of anchovy (Engraulis capensis/encrasicolus) in the southern Benguela
C Mullon, P Fréon, C Parada, C van der Lingen, J Huggett (2003)
Fisheries Oceanography 12 (4-5) p. 396-406
Seasonal and ontogenetic changes in the vertical distribution of eggs and larvae of mackerel (Scomber scombrus L.) and horse mackerel (Trachurus trachurus L.)
S H Coombs, D Morgans, N C Halliday (2001)
Fisheries Research 50 (1-2) p. 27-40
Modelling sardine and anchovy ichthyoplankton transport in the Canary Current System
T Brochier, A Ramzi, C Lett, E Machu, A Berraho, P Freon, S Hernandez-Leon (2008)
Journal of Plankton Research 30 (10) p. 1133
Results of a short study of interactions of cetaceans and longline fisheries in Atlantic waters: environmental correlates of catches and depredation events
Gema Hernandez-Milian, Sabine Goetz, Catuxa Varela-Dopico, José Rodriguez-Gutierrez, Joge Romón-Olea, José Fuertes-Gamundi, Edelmiro Ulloa-Alonso, Nick Tregenza, Andy Smerdon, Monserrat Otero, Vicente Tato, Jianjun Wang, M Santos, Alfredo López, Rebeca Lago, Julio Portela, Graham Pierce (2008)
Essential Fish Habitat Mapping in the Mediterranean p. 251-268
http://dx.doi.org/10.1007/978-1-4020-9141-4_19
The future for fisheries
D Pauly, J Alder, E Bennett, V Christensen, P Tyedmers … (2003)
Science
http://www.sciencemag.org/cgi/content/abstract/302/5649/1359
Japanese anchovy egg accumulation at the sea surface or pycnocline{ó}observations and model
Y Tanaka (1992)
Journal of Oceanography 48 (4) p. 461-472
Buoyancy measurements and vertical distribution of eggs of sardine ( Sardina pilchardus) and anchovy ( Engraulis encrasicolus)
S Coombs, G Boyra, L Rueda, A Uriarte, M Santos, D Conway, N Halliday (2004)
Marine Biology 145 (5) p. 959-970
http://dx.doi.org/10.1007/s00227-004-1389-4
Interpolating, extrapolating, and comparing incidence-based species accumulation curves
R K Colwell, C X Mao, J Chang (2004)
Ecology 85 (10) p. 2717-2727
Statistical data analysis in the computer age
B Efron, R Tibshirani (1991)
Science
http://www.sciencemag.org/cgi/content/abstract/253/5018/390
From food-dependent statistics to metabolic parameters, a practical guide to the use of dynamic energy budget theory
S Kooijman, T Sousa, L Pecquerie, J Van der Meer, T Jager (2008)
Biological Reviews 83 (4) p. 533-552
Fish stock assessments in the Mediterranean: state of the art
J Lleonart, F Maynou (2003)
Scientia Marina 67 (S1)
http://www.google.com/search?client=safari&rls=es-es&q=Fish+stock+assessments+in+the+Me...
Habitat discrimination of juvenile sardines in the Aegean Sea using remotely sensed environmental data
Konstantinos Tsagarakis, Athanassios Machias, Stylianos Somarakis, Marianna Giannoulaki, Andreas Palialexis, Vasilis Valavanis (2008)
Essential Fish Habitat Mapping in the Mediterranean p. 215-223
http://dx.doi.org/10.1007/978-1-4020-9141-4_16
The buoyancy and vertical distribution of eggs of sprat(sprattus sprattus) and pilchard(Sardina pilchardus)
S Coombs, C Fosh, M Keen (1985)
Journal of the Marine Biological Association of the United Kingdom. Plymouth 65 (2) p. 461-474
Mapping abundance distribution of small pelagic species applying hydroacoustics and Co-Kriging techniques
Stratis Georgakarakos, Dimitra Kitsiou (2008)
Essential Fish Habitat Mapping in the Mediterranean p. 155-169
http://dx.doi.org/10.1007/978-1-4020-9141-4_12
Feeding habits and gill raker morphology of three planktivorous pelagic fish species off the coast of northern and western Kyushu in summer
Y Tanaka, I Aoki, S Ohshimo (2006)
Journal of Fish Biology p. 1041-1061