XiP (eXtensible integrative Pipeline) is a flexible, editable and modular environment with a user-friendly interface that does not require previous advanced programming skills to run, construct and edit workflows. XiP allows the construction of workflows by linking components written in both R and Java, the analysis of high-throughput data in grid engine systems and also the development of customized pipelines that can be encapsulated in a package and distributed. XiP already comes with several ready-to-use pipeline flows for the most common genomic and transcriptomic analysis and ∼300 computational components. © The Author(s) 2012. Published by Oxford University Press.
CITATION STYLE
Nagasaki, M., Fujita, A., Sekiya, Y., Saito, A., Ikeda, E., Li, C., & Miyano, S. (2013). XiP: A computational environment to create, extend and share workflows. Bioinformatics, 29(1), 137–139. https://doi.org/10.1093/bioinformatics/bts630
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