MPAgenomics: An R package for multi-patient analysis of genomic markers

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Abstract

Background: Last generations of Single Nucleotide Polymorphism (SNP) arrays allow to study copy-number variations in addition to genotyping measures. Results:, standing for multi-patient analysis (MPA) of genomic markers, is an R-package devoted to: (i) efficient segmentation and (ii) selection of genomic markers from multi-patient copy number and SNP data profiles. It provides wrappers from commonly used packages to streamline their repeated (sometimes difficult) manipulation, offering an easy-to-use pipeline for beginners in R. Conclusions: provides an easy tool to analyze data from SNP arrays in R. The R-package is available on CRAN.

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APA

Grimonprez, Q., Celisse, A., Blanck, S., Cheok, M., Figeac, M., & Marot, G. (2014). MPAgenomics: An R package for multi-patient analysis of genomic markers. BMC Bioinformatics, 15(1). https://doi.org/10.1186/s12859-014-0394-y

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