Extracting Biological Pathway Models From NLP Event Representations

Michael Spranger; Sucheendra K. Palaniappan; Samik Ghosh

Conference ProceedingsOPEN ACCESS

Extracting Biological Pathway Models From NLP Event Representations

Spranger M
Palaniappan S
Ghosh S

ACL-IJCNLP 2015 - BioNLP 2015: Workshop on Biomedical Natural Language Processing, Proceedings of the Workshop (2015) 42-51

DOI: 10.18653/v1/w15-3805

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Abstract

This paper describes an an open-source software system for the automatic conversion of NLP event representations to system biology structured data interchange formats such as SBML and BioPAX. It is part of a larger effort to make results of the NLP community available for system biology pathway modelers.

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APA

Spranger, M., Palaniappan, S. K., & Ghosh, S. (2015). Extracting Biological Pathway Models From NLP Event Representations. In ACL-IJCNLP 2015 - BioNLP 2015: Workshop on Biomedical Natural Language Processing, Proceedings of the Workshop (pp. 42–51). Association for Computational Linguistics (ACL). https://doi.org/10.18653/v1/w15-3805

Extracting Biological Pathway Models From NLP Event Representations

Abstract

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