Journal ArticleOPEN ACCESS

OpenSegSPIM: A user-friendly segmentation tool for SPIM data

Bioinformatics (2016) 32(13) 2075-2077
DOI: 10.1093/bioinformatics/btw093
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Abstract

Summary: OpenSegSPIM is an open access and user friendly 3D automatic quantitative analysis tool for Single Plane Illumination Microscopy data. The software is designed to extract, in a userfriendly way, quantitative relevant information from SPIM image stacks, such as the number of nuclei or cells. It provides quantitative measurement (volume, sphericity, distance, intensity) on Light Sheet Fluorescent Microscopy images.

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APA

Gole, L., Ong, K. H., Boudier, T., Yu, W., & Ahmed, S. (2016). OpenSegSPIM: A user-friendly segmentation tool for SPIM data. Bioinformatics, 32(13), 2075–2077. https://doi.org/10.1093/bioinformatics/btw093

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