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The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

  • R B
  • M S
  • G D
  • et al.
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Abstract

The Generation Challenge programme (GCP) is a global crop research consortium directed toward crop improvement through the application of comparative biology and genetic resources characterization to plant breeding. A key consortium research activity is the development of a GCP crop bioinformatics platform to support GCP research. This platform includes the following: (i) shared, public platform-independent domain models, ontology, and data formats to enable interoperability of data and analysis flows within the platform; (ii) web service and registry technologies to identify, share, and integrate information across diverse, globally dispersed data sources, as well as to access high-performance computational (HPC) facilities for computationally intensive, high-throughput analyses of project data; (iii) platform-specific middleware reference implementations of the domain model integrating a suite of public (largely open-access/-source) databases and software tools into a workbench to facilitate biodiversity analysis, comparative analysis of crop genomic data, and plant breeding decision making.

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R, B., M, S., G, D., M, R., M, R., T, H., … Hintum, V. (2008). The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science. International Journal of Plant Genomics, 2008, 369601. Retrieved from http://dx.doi.org/10.1155/2008/369601

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