We present an open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database. Pride-asap can be ran in a command line mode for automated processing of multiple PRIDE experiments, but also has a graphical user interface that allows end users to annotate the spectra in PRIDE experiments and to inspect the results in detail. Pride-asap binaries, source code and additional information can be downloaded from http://pride-asa-pipeline.googlecode.com.This article is part of a Special Issue entitled: Standardization and Quality Control in Proteomics. © 2013 Elsevier B.V.
Hulstaert, N., Reisinger, F., Rameseder, J., Barsnes, H., Vizcaíno, J. A., & Martens, L. (2013). Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra. Journal of Proteomics, 95, 89–92. https://doi.org/10.1016/j.jprot.2013.04.011