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HyPhy: Hypothesis testing using phylogenies

Bioinformatics (2005) 21(5) 676-679
DOI: 10.1093/bioinformatics/bti079
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Abstract

Summary: The HyPhypackage is designed to provide a flexible and unified platform for carrying out likelihood-based analyses on multiple alignments of molecular sequence data, with the emphasis on studies of rates and patterns of sequence evolution. © The Author 2004. Published by Oxford University Press. All rights reserved.

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Kosakovsky Pond, S. L., Frost, S. D. W., & Muse, S. V. (2005). HyPhy: Hypothesis testing using phylogenies. Bioinformatics, 21(5), 676–679. https://doi.org/10.1093/bioinformatics/bti079

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