Gene expression profiling is a useful approach for deeper understanding of the specificity of cells, tissues, and organs in the transcriptional level. Recent development of high-throughput next-generation sequence (NGS) allows the RNA-seq method for this profiling. This method provides precise information of transcripts about the quantitation and the structure such as the splicing variants. In this chapter, we describe a method for gene expression profiling of GFP-positive cells from transgenic zebrafish by RNA-seq. We labeled specific cells in the brain with GFP by crossing a Gal4 driver line with the UAS:GFP line, isolated those cells by fluorescence-activated cell sorting (FACS), and analyzed by RNA-seq.
CITATION STYLE
Tanabe, H., Seki, M., Itoh, M., Deepak, A., Lal, P., Horiuchi, T., … Kawakami, K. (2016). Fluorescence-activated cell sorting and gene expression profiling of GFP-positive cells from transgenic zebrafish lines. In Methods in Molecular Biology (Vol. 1451, pp. 93–106). Humana Press Inc. https://doi.org/10.1007/978-1-4939-3771-4_7
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