Background: Multimodal imaging that combines mass spectrometry imaging (MSI) with Raman imaging is a rapidly developing multidisciplinary analytical method used by a growing number of research groups. Computational tools that can visualize and aid the analysis of datasets by both techniques are in demand. Results: Raman2imzML was developed as an open-source converter that transforms Raman imaging data into imzML, a standardized common data format created and adopted by the mass spectrometry community. We successfully converted Raman datasets to imzML and visualized Raman images using open-source software designed for MSI applications. Conclusion: Raman2imzML enables both MSI and Raman images to be visualized using the same file format and the same software for a straightforward exploratory imaging analysis.
CITATION STYLE
Iakab, S. A., Sementé, L., García-Altares, M., Correig, X., & Ràfols, P. (2020). Raman2imzML converts Raman imaging data into the standard mass spectrometry imaging format. BMC Bioinformatics, 21(1). https://doi.org/10.1186/s12859-020-03789-8
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