Interactive exploration of heterogeneous biological networks with Biomine Explorer

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Abstract

Summary: Biomine Explorer is a web application that enables interactive exploration of large heterogeneous biological networks constructed from selected publicly available biological knowledge sources. It is built on top of Biomine, a system which integrates cross-references from several biological databases into a large heterogeneous probabilistic network. Biomine Explorer offers user-friendly interfaces for search, visualization, exploration and manipulation as well as public and private storage of discovered subnetworks with permanent links suitable for inclusion into scientific publications. A JSON-based web API for network search queries is also available for advanced users.

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Podpečan, V., Ramšak, Ž., Gruden, K., Toivonen, H., & Lavrač, N. (2019). Interactive exploration of heterogeneous biological networks with Biomine Explorer. Bioinformatics, 35(24), 5385–5388. https://doi.org/10.1093/bioinformatics/btz509

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