Crystal structure of DnaT 84-153 -dT10 ssDNA complex reveals a novel single-stranded DNA binding mode

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Abstract

DnaT is a primosomal protein that is required for the stalled replication fork restart in Escherichia coli. As an adapter, DnaT mediates the PriA-PriB-ssDNA ternary complex and the DnaB/C complex. However, the fundamental function of DnaT during PriA-dependent primosome assembly is still a black box. Here, we report the 2.83 ÅDnaT(84-153)-dT10 ssDNA complex structure, which reveals a novel three-helix bundle single-stranded DNA binding mode. Based on binding assays and negative-staining electron microscopy results, we found that DnaT can bind to phiX 174 ssDNA to form nucleoprotein filaments for the first time, which indicates that DnaT might function as a scaffold protein during the PriA-dependent primosome assembly. In combination with biochemical analysis, we propose a cooperative mechanism for the binding of DnaT to ssDNA and a possible model for the assembly of PriA-PriB-ssDNA-DnaT complex that sheds light on the function of DnaT during the primosome assembly and stalled replication fork restart. This report presents the first structure of the DnaT C-terminal complex with ssDNA and a novel model that explains the interactions between the three-helix bundle and ssDNA.

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Liu, Z., Chen, P., Wang, X., Cai, G., Niu, L., Teng, M., & Li, X. (2014). Crystal structure of DnaT 84-153 -dT10 ssDNA complex reveals a novel single-stranded DNA binding mode. Nucleic Acids Research, 42(14), 9470–9483. https://doi.org/10.1093/nar/gku633

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