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Late Breaking Abstract - Identifying and phenotyping COVID-19 patients using machine learning on chest x-rays

  • Fleischer J
  • Islam M
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Abstract

Background: CT scans give highly detailed lung images, but patient transport, machine preparation, and scanning time are limiting factors. Chest x-rays are more widely available, but images are non-specific and often difficult to interpret. Aims and Objectives: To develop a machine-learned early detection system, using conventional chest x-rays, to identify COVID-19 and differentiate its phenotypes. Method(s): We extracted features of chest x-rays using a DenseNet-121 neural network. We then sorted the images according to similarity using the UMAP clustering algorithm (Uniform Manifold Approximation and Projection). Both algorithms were unsupervised, in the sense that data labels for presence or absence of disease were known but only provided afterward for visualization; they were not seen or used by the algorithms. Result(s): Our method achieved a 95.19% accuracy in the COVIDx dataset (Wang et al. arXiv 2020). Its performance for detecting normal, pneumonia, and COVID-19 cases is summarized in Table 1. UMAP clustering for the x-ray images is shown in Fig. 1. Location in the UMAP space gives a quantitative severity scale for COVID-19. Conclusion(s): Feature extraction can identify unique signatures of COVID-19 chest x-rays. A nonlinear clustering algorithm reveals two types of COVID-19 response: one resembling pneumonia and one with a more normal presentation.

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Fleischer, J., & Islam, M. T. (2020). Late Breaking Abstract - Identifying and phenotyping COVID-19 patients using machine learning on chest x-rays (p. 4151). European Respiratory Society (ERS). https://doi.org/10.1183/13993003.congress-2020.4151

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