GPU-based deep convolutional neural network for tomographic phase microscopy with ℓ1 fitting and regularization

  • Qiao H
  • Wu J
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Abstract

Tomographic phase microscopy (TPM) is a unique imaging modality to measure the three-dimensional refractive index distribution of transparent and semitransparent samples. However, the requirement of the dense sampling in a large range of incident angles restricts its temporal resolution and prevents its application in dynamic scenes. Here, we propose a graphics processing unit-based implementation of a deep con-volutional neural network to improve the performance of phase tomography, especially with much fewer incident angles. As a loss function for the regularized TPM, the l 1-norm sparsity constraint is introduced for both data-fidelity term and gradient-domain regularizer in the multislice beam propagation model. We compare our method with several state-of-the-art algorithms and obtain at least 14 dB improvement in signal-to-noise ratio. Experimental results on HeLa cells are also shown with different levels of data reduction.

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Qiao, H., & Wu, J. (2018). GPU-based deep convolutional neural network for tomographic phase microscopy with ℓ1 fitting and regularization. Journal of Biomedical Optics, 23(06), 1. https://doi.org/10.1117/1.jbo.23.6.066003

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