INDRA-IPM: Interactive pathway modeling using natural language with automated assembly

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Abstract

Summary: INDRA-IPM (Interactive Pathway Map) is a web-based pathway map modeling tool that combines natural language processing with automated model assembly and visualization. INDRAIPM contextualizes models with expression data and exports them to standard formats. Availability and implementation: INDRA-IPM is available at: http://pathwaymap.indra.bio. Source code is available at http://github.com/sorgerlab/indra-pathway-map. The underlying web service API is available at http://api.indra.bio:8000.

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Todorov, P. V., Gyori, B. M., Bachman, J. A., & Sorger, P. K. (2019). INDRA-IPM: Interactive pathway modeling using natural language with automated assembly. Bioinformatics, 35(21), 4501–4503. https://doi.org/10.1093/bioinformatics/btz289

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