Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing

  • Asaff-Torres A
  • Armendáriz-Ruiz M
  • Kirchmayr M
  • et al.
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Abstract

Rhizospheric microbiomes of Capsicum annuum L. cultivated either conventionally or amended with a synthetic microbial consortium or a root exudate inductor, were characterized by 16S/internal transcribed spacer 2 (ITS2) rRNA amplicon metagenome sequencing. The most abundant taxa found, although differently represented in each treatment, were Gammaproteobacteria , Alphaproteobacteria , Actinobacteria , and Bacilli , as well as Chytridiomycetes and Mortierellomycotina.

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Asaff-Torres, A., Armendáriz-Ruiz, M., Kirchmayr, M., Rodríguez-Heredia, R., Orozco, M., Mateos-Díaz, J. C., … Verdín, J. (2017). Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing . Genome Announcements, 5(30). https://doi.org/10.1128/genomea.00626-17

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