rnaSeqMap: A Bioconductor package for RNA sequencing data exploration

7Citations
Citations of this article
109Readers
Mendeley users who have this article in their library.

Abstract

The throughput of commercially available sequencers has recently significantly increased. It has reached the point where measuring the RNA expression by the depth of coverage has become feasible even for largest genomes. The development of software tools is constantly following the progress of biological hardware. In particular, as RNA sequencing software can be regarded genome browsers, exon junction tools and statistical tools operating on counts of reads in predefined regions. The library rnaSeqMap, freely available via Bioconductor, is an RNA sequencing software which is independent of any biological hardware platform. It is based upon standard Bioconductor infrastructure for sequencing data and includes several novel features focused on deeper understanding of coverage expression profiles and discovery of novel transcription regions.

Cite

CITATION STYLE

APA

Leśniewska, A., & Okoniewski, M. J. (2011). rnaSeqMap: A Bioconductor package for RNA sequencing data exploration. BMC Bioinformatics, 12. https://doi.org/10.1186/1471-2105-12-200

Register to see more suggestions

Mendeley helps you to discover research relevant for your work.

Already have an account?

Save time finding and organizing research with Mendeley

Sign up for free