The dynamics of inter-residue distances in bovine pancreatic trypsin inhibitor

  • Karain W
  • Ajarmah B
  • Qaraeen N
  • 1


    Mendeley users who have this article in their library.
  • 0


    Citations of this article.


Time series for the distance between selected residues surrounding the active site in bovine pancreatic trypsin inhibitor (BPTI) protein are analyzed using a one-dimensional Langevin-type stochastic difference equation. The time series are extracted from molecular dynamics simulations performed on the protein in vacuum and water. The deterministic and stochastic contributions to the time series show interesting behavior for certain residue pairs only, and only in solvated molecular dynamics simulations. © 2006 Elsevier B.V. All rights reserved.

Author-supplied keywords

  • Langevin equation
  • Protein conformations
  • Time-series analysis

Get free article suggestions today

Mendeley saves you time finding and organizing research

Sign up here
Already have an account ?Sign in

Find this document


  • Wael I. Karain

  • Basem Ajarmah

  • Nael I. Qaraeen

Cite this document

Choose a citation style from the tabs below

Save time finding and organizing research with Mendeley

Sign up for free