Structural characterization of a group II 2/2 hemoglobin from the plant pathogen Agrobacterium tumefaciens

  • Pesce A
  • Nardini M
  • Labarre M
 et al. 
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Abstract

Within the 2/2 hemoglobin sub-family, no group II 2/2Hbs from proteobacteria have been so far studied. Here we present the first structural characterization of a group II 2/2Hb from the soil and phytopathogenic bacterium Agrobacterium tumefaciens (At-2/2HbO). The crystal structure of ferric At-2/2HbO (reported at 2.1 Å resolution) shows the location of specific/unique heme distal site residues (e.g., His(42)CD1, a residue distinctive of proteobacteria group II 2/2Hbs) that surround a heme-liganded water molecule. A highly intertwined hydrogen-bonded network, involving residues Tyr(26)B10, His(42)CD1, Ser(49)E7, Trp(93)G8, and three distal site water molecules, stabilizes the heme-bound ligand. Such a structural organization suggests a path for diatomic ligand diffusion to/from the heme. Neither a similar distal site structuring effect nor the presence of distal site water molecules has been so far observed in group I and group III 2/2Hbs, thus adding new distinctive information to the complex picture of currently available 2/2Hb structural and functional data. This article is part of a Special Issue entitled: Protein Structure and Function in the Crystalline State. © 2010 Elsevier B.V. All rights reserved.

Author-supplied keywords

  • 2/2 Hemoglobin
  • Diatomic ligand recognition
  • Globin fold
  • Heme stabilization
  • Truncated hemoglobin

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Authors

  • Alessandra Pesce

  • Marco Nardini

  • Marie Labarre

  • Christian Richard

  • Jonathan B. Wittenberg

  • Beatrice A. Wittenberg

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