Alexie Papanicolaou Lecturer in Bioinformatics

OCE PostDoctoral Fellow

CSIRO Black Mountain, ACT

Location
Sydney, Australia
Discipline
Biological Sciences
Interests
Informatics, databases, genetics, ecology & evolution, functional genomics, insects, non-model species
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About

I work on the (bio)informatics of resource-poor model species, mostly...
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Publications

  • Chemosensory genes identified in the antennal transcriptome of the blowfly Calliphora stygia

    Leitch O, Papanicolaou A, Lennard C, Kirkbride K, Anderson A

    BMC Genomics (2015)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome of Australian Environmental Strain WM 09.24 of the Opportunistic Human Pathogen Scedosporium aurantiacum

    Genome Announcements (2015)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Chemosensory receptor genes in the Oriental tobacco budworm Helicoverpa assulta.

    Xu W, Papanicolaou a, Liu N, Dong S, Anderson a

    Insect molecular biology (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Comparative genomics of the mimicry switch in Papilio dardanus Comparative genomics of the mimicry switch in Papilio dardanus

    Timmermans M, Baxter S, Clark R, Heckel D, Vogel H, Papanicolaou A et al.

    Proceedings of the Royal Society B: Biological Sciences (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera.

    Liu N, Xu W, Papanicolaou A, Dong S, Anderson A

    BMC genomics (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Blue: correcting sequencing errors using consensus and context.

    Greenfield P, Duesing K, Papanicolaou A, Bauer D

    Bioinformatics (Oxford, England) (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Novel aquatic silk genes from Simulium (Psilozia) vittatum (Zett) Diptera: Simuliidae

    Papanicolaou A, Woo A, Brei B, Ma D, Masedunskas A, Gray E et al.

    Insect Biochemistry and Molecular Biology (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation.

    Hines H, Papa R, Ruiz M, Papanicolaou A, Wang C, Nijhout H et al.

    BMC Genomics (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment

    i5K consortium

    Journal of Heredity (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design.

    Terenius O, Papanicolaou A, Garbutt J, Eleftherianos I, Huvenne H, Kanginakudru S et al.

    Journal of insect physiology (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

    Haas B, Papanicolaou A, Yassour M, Grabherr M, Blood P, Bowden J et al.

    Nature Protocols (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Butterfly genome reveals promiscuous exchange of mimicry adaptations among species.

    Heliconius Genome Consortium

    Nature (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A Roadmap for Whitefly Genomics Research : Lessons from Previous Insect Genome Projects

    Edwards O, Papanicolaou A

    Journal of Integrative Agriculture (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The GMOD Drupal bioinformatic server framework.

    Papanicolaou A, Heckel D

    Bioinformatics (Oxford, England) (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • ButterflyBase: a platform for lepidopteran genomics.

    Papanicolaou A, Gebauer-Jung S, Blaxter M, Owen McMillan W, Jiggins C

    Nucleic Acids Research (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genomic tools and cDNA derived markers for butterflies

    Papanicolaou A, Joron M, McMillan W, Blaxter M, Jiggins C

    Molecular Ecology (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Characterization of a hotspot for mimicry: Assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus

    Ferguson L, Lee S, Chamberlain N, Nadeau N, Joron M, Baxter S et al.

    Molecular Ecology (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Heliconius wing patterns: an evo-devo model for understanding phenotypic diversity

    Joron M, Jiggins C, Papanicolaou A, McMillan W

    Heredity (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Butterfly genomics eclosing

    Beldade P, McMillan W, Papanicolaou A

    Heredity (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Synteny and chromosome evolution in the Lepidoptera: evidence from mapping in Heliconius melpomene

    Pringle E, Baxter S, Webster C, Papanicolaou A, Lee S, Jiggins C

    Genetics (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Next generation transcriptomes for next generation genomes using est2assembly.

    Papanicolaou A, Stierli R, Ffrench-Constant R, Heckel D

    BMC Bioinformatics (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

OCE PostDoctoral Fellow

CSIRO Black Mountain, ACT

July 2010 - Present

Research Associate

University of Exeter

November 2008 - May 2010 (1 year 6 months)

Research Assistant

University of Edinburgh

June 2005 - October 2005 (4 months)

Education history

Max Planck Institute for Chemical Ecology

Ph.D.

January 2006 - Present

University of Edinburgh

MRes Evolutionary Genetics

October 2004 - October 2005 (1 year)

University of Edinburgh

BSc Genetics

September 2000 - June 2003 (2 years 9 months)