Alexie Papanicolaou Lecturer in Bioinformatics

OCE PostDoctoral Fellow

CSIRO Black Mountain, ACT

Location
Sydney, Australia
Discipline
Biological Sciences
Interests
Informatics, databases, genetics, ecology & evolution, functional genomics, insects, non-model species
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About

I work on the (bio)informatics of resource-poor model species, mostly...
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Publications

Chemosensory genes identified in the antennal transcriptome of the blowfly Calliphora stygia

Leitch O, Papanicolaou A, Lennard C, Kirkbride K, Anderson A

BMC Genomics (2015)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Draft Genome of Australian Environmental Strain WM 09.24 of the Opportunistic Human Pathogen Scedosporium aurantiacum

Genome Announcements (2015)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Chemosensory receptor genes in the Oriental tobacco budworm Helicoverpa assulta.

Xu W, Papanicolaou a, Liu N, Dong S, Anderson a

Insect molecular biology (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Comparative genomics of the mimicry switch in Papilio dardanus Comparative genomics of the mimicry switch in Papilio dardanus

Timmermans M, Baxter S, Clark R, Heckel D, Vogel H, Papanicolaou A et al.

Proceedings of the Royal Society B: Biological Sciences (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera.

Liu N, Xu W, Papanicolaou A, Dong S, Anderson A

BMC genomics (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Blue: correcting sequencing errors using consensus and context.

Greenfield P, Duesing K, Papanicolaou A, Bauer D

Bioinformatics (Oxford, England) (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Novel aquatic silk genes from Simulium (Psilozia) vittatum (Zett) Diptera: Simuliidae

Papanicolaou A, Woo A, Brei B, Ma D, Masedunskas A, Gray E et al.

Insect Biochemistry and Molecular Biology (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment

i5K consortium

Journal of Heredity (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Haas B, Papanicolaou A, Yassour M, Grabherr M, Blood P, Bowden J et al.

Nature Protocols (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A Roadmap for Whitefly Genomics Research : Lessons from Previous Insect Genome Projects

Edwards O, Papanicolaou A

Journal of Integrative Agriculture (2012)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The GMOD Drupal bioinformatic server framework.

Papanicolaou A, Heckel D

Bioinformatics (Oxford, England) (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

ButterflyBase: a platform for lepidopteran genomics.

Papanicolaou A, Gebauer-Jung S, Blaxter M, Owen McMillan W, Jiggins C

Nucleic Acids Research (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Genomic tools and cDNA derived markers for butterflies

Papanicolaou A, Joron M, McMillan W, Blaxter M, Jiggins C

Molecular Ecology (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Characterization of a hotspot for mimicry: Assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus

Ferguson L, Lee S, Chamberlain N, Nadeau N, Joron M, Baxter S et al.

Molecular Ecology (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Heliconius wing patterns: an evo-devo model for understanding phenotypic diversity

Joron M, Jiggins C, Papanicolaou A, McMillan W

Heredity (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Butterfly genomics eclosing

Beldade P, McMillan W, Papanicolaou A

Heredity (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Synteny and chromosome evolution in the Lepidoptera: evidence from mapping in Heliconius melpomene

Pringle E, Baxter S, Webster C, Papanicolaou A, Lee S, Jiggins C

Genetics (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Next generation transcriptomes for next generation genomes using est2assembly.

Papanicolaou A, Stierli R, Ffrench-Constant R, Heckel D

BMC Bioinformatics (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

OCE PostDoctoral Fellow

CSIRO Black Mountain, ACT

July 2010 - Present

Research Associate

University of Exeter

November 2008 - May 2010 (1 year 6 months)

Research Assistant

University of Edinburgh

June 2005 - October 2005 (4 months)

Education history

Max Planck Institute for Chemical Ecology

Ph.D.

January 2006 - Present

University of Edinburgh

MRes Evolutionary Genetics

October 2004 - October 2005 (1 year)

University of Edinburgh

BSc Genetics

September 2000 - June 2003 (2 years 9 months)