Alexie Papanicolaou

  • Lecturer in Bioinformatics
  • University of Western Sydney Hawkesbury Institute for the Environment

Research Interests

Informatics databases genetics ecology & evolution functional genomics insects non-model species

Followers (20)

  • Paul Berkman

    Paul Berkman CSIRO Queensland Bioscience Precinct

  • Stephen Bridgett

    Stephen Bridgett Queen's University Belfast Faculty of Medicine Health and Life Sciences

  • Nassib Nassar

    Nassib Nassar

  • Annette McGrath

    Annette McGrath

  • Karen Cranston

    Karen Cranston National Evolutionary Synthesis Center (NESCent)

Explore network

Following (20)

  • Karen Cranston

    Karen Cranston National Evolutionary Synthesis Center (NESCent)

  • Annette McGrath

    Annette McGrath

  • Stephen Bridgett

    Stephen Bridgett Queen's University Belfast Faculty of Medicine Health and Life Sciences

  • Paul Berkman

    Paul Berkman CSIRO Queensland Bioscience Precinct

  • Nathan Dunn

    Nathan Dunn CSIRO Ecosystem Sciences

Explore network

About

I work on the (bio)informatics of resource-poor model species, mostly...

Publications

The life cycle of a genome project: perspectives and guidelines inspired by insect genome projects

Papanicolaou A

F1000Research (2016)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Chemosensory genes identified in the antennal transcriptome of the blowfly Calliphora stygia

Leitch O, Papanicolaou A, Lennard C, Kirkbride K, Anderson A

BMC Genomics (2015)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Draft Genome of Australian Environmental Strain WM 09.24 of the Opportunistic Human Pathogen Scedosporium aurantiacum

Pérez-Bercoff , Papanicolaou A, Ramsperger M, Kaur J, Patel H, Harun A, Duan S, Elbourne L, Bouchara J, Paulsen I, Nevalainen H, Meyer W, Huttley G

Genome Announcements (2015)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Genomewide transcriptional signatures of migratory flight activity in a globally invasive insect pest

Jones C, Papanicolaou A, Mironidis G, Vontas J, Yang Y, Lim K, Oakeshott J, Bass C, Chapman J

Molecular Ecology (2015)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

OfftargetFinder: a web tool for species-specific RNAi design

Good R, Varghese T, Golz J, Russell D, Papanicolaou A, Edwards O, Robin C

Bioinformatics (2015)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Blue: correcting sequencing errors using consensus and context

Greenfield P, Duesing K, Papanicolaou A, Bauer D

Bioinformatics (2014)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Chemosensory receptor genes in the Oriental tobacco budworm Helicoverpa assulta.

Xu W, Papanicolaou A, Liu N, Dong S, Anderson A

Insect molecular biology (2014)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera.

Liu N, Xu W, Papanicolaou A, Dong S, Anderson A

BMC genomics (2014)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Haas B, Papanicolaou A, Yassour M, Grabherr M, Blood P, Bowden J, Couger M, Eccles D, Li B, Lieber M, Macmanes M, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey C, Henschel R, LeDuc R, Friedman N, Regev A

Nature Protocols (2013)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Novel aquatic silk genes from Simulium (Psilozia) vittatum (Zett) Diptera: Simuliidae

Papanicolaou A, Woo A, Brei B, Ma D, Masedunskas A, Gray E, Xiao G, Cho S, Brockhouse C

Insect Biochemistry and Molecular Biology (2013)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment

Evans J, i5K Consortium

Journal of Heredity (2013)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A Roadmap for Whitefly Genomics Research: Lessons from Previous Insect Genome Projects

Edwards O, Papanicolaou A

Journal of Integrative Agriculture (2012)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species.

The Heliconius Genome Consortium

Nature (2012)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus

FERGUSON L, LEE S, CHAMBERLAIN N, NADEAU N, JORON M, BAXTER S, WILKINSON P, Papanicolaou A, KUMAR S, KEE T, CLARK R, DAVIDSON C, GLITHERO R, BEASLEY H, VOGEL H, FFRENCH-CONSTANT R, JIGGINS C

Molecular Ecology (2010)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design

Terenius O, Papanicolaou A, Garbutt J, Eleftherianos I, Huvenne H, Kanginakudru S, Albrechtsen M, An C, Aymeric J, Barthel A, Bebas P, Bitra K, Bravo A, Chevalier F, Collinge D, Crava C, de Maagd R, Duvic B, Erlandson M, Faye I, Felföldi G, Fujiwara H, Futahashi R, Gandhe A, Gatehouse H, Gatehouse L, Giebultowicz J, Gómez I, Grimmelikhuijzen C, Groot A, Hauser F, Heckel D, Hegedus D, Hrycaj S, Huang L, Hull J, Iatrou K, Iga M, Kanost M, Kotwica J, Li C, Li J, Liu J, Lundmark M, Matsumoto S, Meyering-Vos M, Millichap P, Monteiro A, Mrinal N, Niimi T, Nowara D, Ohnishi A, Oostra V, Ozaki K, Papakonstantinou M, Popadic A, Rajam M, Saenko S, Simpson R, Soberón M, Strand M, Tomita S, Toprak U, Wang P, Wee C, Whyard S, Zhang W, Nagaraju J, Ffrench-Constant R, Herrero S, Gordon K, Swevers L, Smagghe G, Sriramana K, Maagd R

Journal of Insect Physiology (2010)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The GMOD Drupal bioinformatic server framework.

Papanicolaou A, Heckel D

Bioinformatics (Oxford, England) (2010)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Next generation transcriptomes for next generation genomes using est2assembly.

Papanicolaou A, Stierli R, Ffrench-Constant R, Heckel D

BMC Bioinformatics (2009)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Butterfly genomics eclosing

Beldade P, McMillan W, Papanicolaou A

Heredity (2008)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

ButterflyBase: a platform for lepidopteran genomics.

Papanicolaou A, Gebauer-Jung S, Blaxter M, Owen McMillan W, Jiggins C

Nucleic Acids Research (2008)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Synteny and Chromosome Evolution in the Lepidoptera: Evidence From Mapping in Heliconius melpomene

Pringle E, Baxter S, Webster C, Papanicolaou A, Lee S, Jiggins C

Genetics (2007)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Heliconius wing patterns: an evo-devo model for understanding phenotypic diversity

Joron M, Jiggins C, Papanicolaou A, McMillan W

Heredity (2006)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Genomic tools and cDNA derived markers for butterflies

Papanicolaou A, JORON M, MCMILLAN W, BLAXTER M, JIGGINS C

Molecular Ecology (2005)

  • Get full text at journal
  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Lecturer in Bioinformatics

University of Western Sydney Hawkesbury Institute for the Environment

January 2015 - Present

OCE PostDoctoral Fellow

CSIRO Black Mountain Laboratories

July 2010 - January 2015 (4 years 6 months)

Research Associate

University of Exeter

November 2008 - May 2010 (1 year 6 months)

Research Assistant

University of Edinburgh

June 2005 - October 2005 (4 months)

Education history

Max-Planck-Institute for Chemical Ecology

Ph.D.

January 2006 - December 2010 (4 years 11 months)

University of Edinburgh

MRes Evolutionary Genetics

October 2004 - October 2005 (1 year)

University of Edinburgh

BSc Genetics

September 2000 - June 2003 (2 years 9 months)