Alistair Boettiger

  • PhD Student
  • Student > Ph. D. Student
  • Postdoc, Levine Lab
  • Univeristy of California, Berkeley
  • Agricultural and Biological Sciences
Mendeley Advisor

Research Interests

Stochastic processes in gene regulation

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Publications

Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes

Beliveau B, Boettiger A, Avendaño M, Jungmann R, McCole R, Joyce E, et al.

Nature Communications (2015)

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Spatially resolved, highly multiplexed RNA profiling in single cells.

Chen K, Boettiger A, Moffitt J, Wang S, Zhuang X

Science (New York, N.Y.) (2015)

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Analytic Approaches to Stochastic Gene Expression in Multicellular Systems

Boettiger A

Biophysical Journal (2013)

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Rapid Transcription Fosters Coordinate snail Expression in the Drosophila Embryo.

Boettiger A, Levine M

Cell reports (2013)

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Inferring ecological and behavioral drivers of African elephant movement using a linear filtering approach

Boettiger A, Wittemyer G, Starfield R, Volrath F, Douglas-Hamilton I, Getz W

Ecology (2011)

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Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo.

Perry M, Boettiger A, Levine M

Proc. Natl. Acad. Sci. USA (2011)

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Supp Mat: Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo.

Perry M, Boettiger A, Levine M

Supplement (2011)

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Transcriptional regulation: effects of promoter proximal pausing on speed, synchrony and reliability.

Boettiger A, Ralph P, Evans S

PLoS computational biology (2011)

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Shadow enhancers foster robustness of drosophila gastrulation

Perry M, Boettiger A, Bothma J, Levine M

Current Biology (2010)

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Emergent complexity in simple neural systems

Boettiger A, Oster G

Communicative and Integrative Biology (2009)

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Evolution of Insect Dorsoventral Patterning Mechanisms.

Perry M, Cande J, Boettiger A, Levine M

Cold Spring Harbor symposia on quantitative biology (2009)

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Supporting Online Material for Synchronous and Stochastic Patterns of Gene Activation in the Drosophila Embryo

Boettiger A, Levine M

Science (Supp. Mat) (2009)

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Synchronous and stochastic patterns of gene activation in the Drosophila embryo.

Boettiger A, Levine M

Science (New York, N.Y.) (2009)

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The neural origins of shell structure and pattern in aquatic mollusks.

Boettiger A, Ermentrout B, Oster G

Proc. Natl. Acad. Sci. USA (2009)

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Nuclear trapping shapes the terminal gradient in the Drosophila embryo.

Coppey M, Boettiger A, Berezhkovskii A, Shvartsman S

Current Biology (2008)

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Modeling the bicoid gradient: diffusion and reversible nuclear trapping of a stable protein.

Coppey M, Berezhkovskii A, Kim Y, Boettiger A, Shvartsman S

Developmental Biology (2007)

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Role of boundary conditions in an experimental model of epithelial wound healing.

Nikolić D, Boettiger A, Bar-Sagi D, Carbeck J, Shvartsman S

American journal of physiology. Cell physiology (2006)

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Supplemental Data Nuclear Trapping Shapes the Terminal Gradient in the Drosophila Embryo

Coppey M, Boettiger A, Berezhkovskii A, Shvartsman S

Current Biology (Supp. Mat)

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Supplemental Information Shadow Enhancers Foster Robustness of Drosophila Gastrulation

Perry M, Boettiger A, Bothma J, Levine M

Current Biology (Supp. Mat)

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The Neural Origins of Aquatic Mollusk Structure and Pattern: Supplementary Information

Boettiger A, Ermentrout B, Oster G

PNAS (Supp. Mat)

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Professional experience

Postdoc, Levine Lab

Univeristy of California, Berkeley

August 2007 - Present

Education history

University of California Berkeley

PhD, Biophysics

August 2007 - May 2011 (3 years 9 months)

Princeton University

A.B. Physics (magna cum laude)

September 2003 - June 2007 (3 years 9 months)