Chris Mungall

Scientist

Lawrence Berkeley Laboratory

Location
Berkeley, California, United States
Discipline
Biological Sciences
Interests
ontologies evo-devo-pheno neurobiology
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Followers (13)

  • alex garcia

    alex garcia

  • Steve Moss

    Steve Moss The University of Hull

  • Jyl Boline

    Jyl Boline

  • Mikel Egaña Aranguren

    Mikel Egaña Aranguren Ontology Engineering Group. Universidad Politécnica de Madrid.

  • Paul Gagniuc

    Paul Gagniuc

Following (13)

  • Hilmar Lapp

    Hilmar Lapp National Evolutionary Synthesis Center (NESCent)

  • Jason Stajich

    Jason Stajich University of California, Riverside

  • Ian Holmes

    Ian Holmes

  • Jim Balhoff

    Jim Balhoff National Evolutionary Synthesis Center (NESCent)

  • Peter Robinson

    Peter Robinson

Publications

The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease

Groza T, Köhler S, Moldenhauer D, Vasilevsky N, Baynam G, Zemojtel T et al.

The American Journal of Human Genetics (2015)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Disease insights through cross-species phenotype comparisons

Haendel M, Vasilevsky N, Brush M, Hochheiser H, Jacobsen J, Oellrich A et al.

Mammalian Genome (2015)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

Arner E, Daub C, Vitting-Seerup K, Andersson R, Lilje B, Drablos F et al.

Science (2015)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.

Köhler S, Doelken S, Mungall C, Bauer S, Firth H, Bailleul-Forestier I et al.

Nucleic Acids Res. (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Linking Human Diseases to Animal Models using Ontology-based Phenotype Annotation

Washington N, Haendel M, Mungall C, Ashburner M, Westerfield M, Lewis S

PLoS Biology (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Clinical interpretation of CNVs with cross-species phenotype data

Kohler S, Schoeneberg U, Czeschik J, Doelken S, Hehir-kwa J, Ibn-Salem J et al.

J. Med. Genet. (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Gateways to the FANTOM5 promoter level mammalian expression atlas

Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S et al.

Genome Biology (2015)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Gene Ontology Consortium: going forward.

The Gene Ontology Consortium

Nucleic acids research (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Finding Our Way through Phenotypes

Deans A, Lewis S, Huala E, Anzaldo S, Ashburner M, Balhoff J et al.

PLoS Biology (2015)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

TermGenie - A web application for pattern-based ontology class generation

Dietze H, Berardini T, Foulger R, Hill D, Lomax J, OsumiSutherland D et al.

Journal of Biomedical Semantics (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.

Kibbe W, Arze C, Felix V, Mitraka E, Bolton E, Fu G et al.

Nucleic acids research (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Use of OWL within the Gene Ontology

Mungall C, Dietze H, Osumi-Sutherland D

Proceedings of the 11th International Workshop on OWL: Experiences and Directions (OWLED 2014) (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Deletions of chromosomal regulatory boundaries are associated with congenital disease

Ibn-Salem J, Köhler S, Love M, Chung H, Huang N, Hurles M et al.

Genome Biology (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology

Thacker R, Díaz M, Kerner A, Vignes-Lebbe R, Segerdell E, Haendel M et al.

Journal of Biomedical Semantics (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets

Poelen J, Simons J, Mungall C

Ecological Informatics (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

CLO: The cell line ontology

Sarntivijai S, Lin Y, Xiang Z, Meehan T, Diehl A, Vempati U et al.

Journal of Biomedical Semantics (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

Dahdul W, Cui H, Mabee P, Mungall C, Osumi-Sutherland D, Walls R et al.

Journal of Biomedical Semantics (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Standardized description of scientific evidence using the Evidence Ontology ( ECO )

Chibucos M, Mungall C, Balakrishnan R, Christie K, Huntley R, White O et al.

Database (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon

Haendel M, Balhoff J, Bastian F, Blackburn D, Blake J, Bradford Y et al.

Journal of Biomedical Semantics (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A method for increasing expressivity of Gene Ontology annotations using a compositional approach

Huntley R, Harris M, Alam-Faruque Y, Blake J, Carbon S, Dietze H et al.

BMC Bioinformatics (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Formalization of Genome Interval Relations

Mungall C

bioRxiv (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Representing Kidney Development Using the Gene Ontology.

Alam-Faruque Y, Hill D, Dimmer E, Harris M, Foulger R, Tweedie S et al.

PloS one (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The influence of disease categories on gene candidate predictions from model organism phenotypes

Oellrich A, Koehler S, Washington N, Mungall C, Lewis S, Haendel M et al.

Journal of Biomedical Semantics (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation.

Morikawa H, Ohkura N, Vandenbon A, Itoh M, Nagao-Sato S, Kawaji H et al.

Proceedings of the National Academy of Sciences of the United States of America (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

An atlas of active enhancers across human cell types and tissues

Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M et al.

Nature (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A promoter-level mammalian expression atlas

Forrest A, Kawaji H, Rehli M, Kenneth Baillie J, de Hoon M, Haberle V et al.

Nature (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The environment ontology: contextualising biological and biomedical entities

Buttigieg P, Morrison N, Smith B, Mungall C, Lewis S

Journal of Biomedical Semantics (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A knowledge based approach to matching human neurodegenerative disease and animal models.

Maynard S, Mungall C, Lewis S, Imam F, Martone M

Frontiers in neuroinformatics (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.

Karp D, Marthandan N, Marsh S, Ahn C, Arnett F, Deluca D et al.

Human molecular genetics (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Improved exome prioritization of disease genes through cross species phenotype comparison.

Robinson P, Köhler S, Oellrich A, Wang K, Mungall C, Lewis S et al.

Genome research (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Improved exome prioritization of disease genes through cross species phenotype comparison.

Robinson P, Kohler S, Oellrich A, Wang K, Mungall C, Lewis S et al.

Genome research (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

What is an anatomy ontology?

Druzinsky R, Mungall C, Haendel M, Lapp H, Mabee P

Anatomical record (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments

Roncaglia P, Martone M, Hill D, Berardini T, Foulger R, Imam F et al.

Journal of Biomedical Semantics (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

What ’ s in a Genotype ?: An Ontological Characterization for Integration of Genetic Variation Data

Brush M, Mungall C, Washington N, Haendel M

Proceedings of the International Conference on Biomedical Ontology 2013, Montreal, Canada, July 7-12, 2013 (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Evolution of the Sequence Ontology terms and relationships

Mungall C, Batchelor C, Eilbeck K

Journal of Biomedical Informatics (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Ontologies for biologists: a community model for the annotation of genomic data

Ashburner M, Mungall C, Lewis S

Cold Spring Harbor symposia on quantitative biology (2003)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Ontology based molecular signatures for immune cell types via gene expression analysis

Meehan T, Vasilevsky N, Mungall C, Dougall D, Haendel M, Blake J et al.

BMC Bioinformatics (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A unified anatomy ontology of the vertebrate skeletal system.

Dahdul W, Balhoff J, Blackburn D, Diehl A, Haendel M, Hall B et al.

PloS one (2012)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Gene Ontology annotations and resources.

The Gene Ontology Consortium, Blake JA, Dolan M, Drabkin H, Hill DP, Li N, Sitnikov D, Bridges S, Burgess S, Buza T, McCarthy F, Peddinti D, Pillai L, Carbon S, Dietze H, Ireland A, Lewis SE, Mungall CJ, Gaudet P, Chrisholm RL, Fey P, Kibbe WA, Basu S, Si W

Nucleic acids research (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

PhenoDigm: analyzing curated annotations to associate animal models with human diseases.

Smedley D, Oellrich A, Köhler S, Ruef B, Westerfield M, Robinson P et al.

Database : the journal of biological databases and curation (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.

Hill D, Adams N, Bada M, Batchelor C, Berardini T, Dietze H et al.

BMC genomics (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Continuous Integration of Open Biological Ontology Libraries

Mungall C, Dietze H, Carbon S, Ireland A, Bauer S, Lewis S

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.

Egaña Aranguren M, Fernández-Breis J, Antezana E, Mungall C, Rodríguez González A, Wilkinson M

Journal of biomedical semantics (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The plant ontology as a tool for comparative plant anatomy and genomic analyses.

Cooper L, Walls R, Elser J, Gandolfo M, Stevenson D, Smith B et al.

Plant & cell physiology (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research

Köhler S, Doelken S, Ruef B, Bauer S, Washington N, Westerfield M et al.

F1000Research (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Entity/quality-based logical definitions for the human skeletal phenome using PATO.

Gkoutos G, Mungall C, Dolken S, Ashburner M, Lewis S, Hancock J et al.

Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Ontologies for biologists: a community model for the annotation of genomic data.

Ashburner M, Mungall C, Lewis S

Cold Spring Harbor symposia on quantitative biology (2003)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Phenotypic overlap in the contribution of individual genes to CNV pathogenicity Accepted manuscript Disease Models & Mechanisms DMM

Doelken S, Köhler S, Mungall C, Gkoutos G, Barbara J

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Ontologies as integrative tools for plant science.

Walls R, Athreya B, Cooper L, Elser J, Gandolfo M, Jaiswal P et al.

American journal of botany (2012)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

MouseFinder: Candidate disease genes from mouse phenotype data.

Chen C, Mungall C, Gkoutos G, Doelken S, Köhler S, Ruef B et al.

Human mutation (2012)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report.

Thomas P, Wood V, Mungall C, Lewis S, Blake J

PLoS computational biology (2012)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A strategy for building neuroanatomy ontologies.

Osumi-Sutherland D, Reeve S, Mungall C, Neuhaus F, Ruttenberg A, Jefferis G et al.

Bioinformatics (Oxford, England) (2012)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Uberon, an integrative multi-species anatomy ontology

Mungall C, Torniai C, Gkoutos G, Lewis S, Haendel M

Genome Biology (2012)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Modularization for the Cell Ontology

Mungall C, Torniai C, Diehl A, Haendel M, Ireland A, Manzoor S et al.

Nature Precedings (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

POSH: The Prolog OWL Shell

Mungall C

Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED2011), San Francisco, USA. June 5-6, 2011 (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Improving ontologies by automatic reasoning and evaluation of logical definitions

Kohler S, Bauer S, Mungall C, Carletti G, Smith C, Schofield P et al.

BMC Bioinformatics (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Taking shortcuts with OWL using safe macros

Mungall C, Ruttenberg A, Osumi-Sutherland D

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data

Hoehndorf R, Batchelor C, Bittner T, Dumontier M, Eilbeck K, Knight R et al.

Applied Ontology (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

An integrated computational pipeline and database to support whole-genome sequence annotation

Mungall C, Misra S, Berman B, Carlson J, Frise E, Harris N et al.

Genome Biol (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Entity/Quality-Based Logical Definitions for the Human Skeletal Phenome using PATO

Gkoutos G, Mungall C, Doelken S, Ashburner M, Lewis S, Hancock J et al.

Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2009) (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Cross-product extensions of the Gene Ontology.

Mungall C, Bada M, Berardini T, Deegan J, Ireland A, Harris M et al.

Journal of Biomedical Informatics (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Experiences Using Logic Programming in Bioinformatics

Mungall C

Lecture notes in computer science (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

{C}reating the gene ontology resource: design and implementation.

Ashburner M, Ball C, Blake J, Butler H, Cherry J, Corradi J et al.

Genome Res (2001)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

CARO - The Common Anatomy Reference Ontology

Haendel M, Neuhaus F, Osumi-Sutherland D, Mabee P, Mejino J, Mungall C et al.

Anatomy Ontologies for Bioinformatics, Principles and Practice (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Next-Generation Information Systems for Genomics

Mungall C

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

An improved ontological representation of dendritic cells as a paradigm for all cell types

Masci A, Arighi C, Diehl A, Lieberman A, Mungall C, Scheuermann R et al.

{BMC} Bioinformatics (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The Sequence Ontology: a tool for the unification of genome annotations

Eilbeck K, Lewis S, Mungall C, Yandell M, Stein L, Durbin R et al.

Genome Biology (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

VO: Vaccine Ontology

He Y, Cowell L, Diehl A, Mobley H, Peters B, Ruttenberg A et al.

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

{A}nnotation of the {D}rosophila melanogaster euchromatic genome: a systematic review.

Misra S, Crosby M, Mungall C, Matthews B, Campbell K, Hradecky P et al.

Genome Biol (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Processing OWL2 ontologies using Thea: An application of logic programming

Vassiliadis V, Wielemaker J, Mungall C

6th OWL Experiences and Directions Workshop (OWLED 2009) (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Relations in Biomedical Ontologies

Smith B, Ceusters W, Kohler J, Kumar A, Lomax J, Mungall C et al.

Genome Biology (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The Gene Ontology (GO) database and informatics resource.

Harris M, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R et al.

Nucleic Acids Res (2004)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Survey-based naming conventions for use in OBO Foundry ontology development

Schober D, Smith B, Lewis S, Kusnierczyk W, Lomax J, Mungall C et al.

BMC Bioinformatics (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.

Bergman C, Pfeiffer B, Rinc?n-Limas D, Hoskins R, Gnirke A, Mungall C et al.

Genome Biol (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Integrating phenotype ontologies across multiple species

Mungall C, Gkoutos G, Smith C, Haendel M, Lewis S, Ashburner M

Genome Biology (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

{C}omparative genomics of the eukaryotes.

Rubin G, Yandell M, Wortman J, Miklos G, Nelson C, Hariharan I et al.

Science (2000)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

{D}esign and implementation of a {CORBA}-based genome mapping system prototype.

Hu J, Mungall C, Nicholson D, Archibald A

Bioinformatics (1998)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

{N}ational {C}enter for {B}iomedical {O}ntology: advancing biomedicine through structured organization of scientific knowledge.

Rubin D, Lewis S, Mungall C, Misra S, Westerfield M, Ashburner M et al.

OMICS: A Journal of Integrative Biology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Apollo: a sequence annotation editor

Lewis S, Searle S, Harris N, Gibson M, Lyer V, Richter J et al.

Genome Biol (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development

Deegan J, Dimmer E, Mungall C

BMC bioinformatics (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A Chado case study: an ontology-based modular schema for representing genome-associated biological information

Mungall C, Emmert D, Consortium T

Bioinformatics (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Mapping between the OBO and OWL ontology languages

Tirmizi S, Aitken S, Moreira D, Mungall C, Sequeda J, Shah N et al.

Journal of Biomedical Semantics (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Genome sequence of the human malaria parasite Plasmodium falciparum

Gardner M, Hall N, Fung E, White O, Berriman M, Hyman R et al.

Nature (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W et al.

Nat Biotechnol (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The generic genome browser: a building block for a model organism system database

Stein L, Mungall C, Shu S, Caudy M, Mangone M, Day A et al.

Genome Res (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

JBrowse: A next-generation genome browser

Skinner M, Uzilov A, Stein L, Mungall C, Holmes I

Genome Research (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The Bioperl toolkit: Perl modules for the life sciences

Stajich J, Block D, Boulez K, Brenner S, Chervitz S, Dagdigian C et al.

Genome Res (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Representing Phenotypes in OWL

Mungall C, Gkoutos G, Washington N, Lewis S

Proceedings of the OWLED 2007 Workshop on OWL: Experience and Directions (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease

Hancock J, Mallon A, Beck T, Gkoutos G, Mungall C, Schofield P

Mammalian Genome (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Genome-wide analysis of human disease alleles reveals that their locations are correlated in paralogous proteins

Yandell M, Moore B, Salas F, Mungall C, MacBride A, White C et al.

PLoS Computational Biology (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The ARKdb: genome databases for farmed and other animals.

Hu J, Mungall C, Law A, Papworth R, Nelson J, Brown A et al.

Nucleic Acids Res (2001)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The Environment Ontology – Linking Environmental Data

Morrison N, Ashburner M, Field D, Lewis S, Mungall C, Schriml L et al.

Proceedings of the Towards eEnvironment conference (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Tools for neuroanatomy and neurogenetics in Drosophila

Pfeiffer B, Jenett A, Hammonds A, Ngo T, Misra S, Murphy C et al.

Proceedings of the National Academy of Sciences of the United States of America (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

ONTO-ToolKit: enabling bio-ontology engineering via Galaxy

Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M

BMC Bioinformatics (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Logical Development of the Cell Ontology

Meehan T, Masci A, Abdulla A, Cowell L, Blake J, Mungall C et al.

BMC Bioinformatics (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Hematopoietic Cell Types: Prototype for a Revised Cell Ontology

Diehl A, Augustine A, Blake J, Cowell L, Gold E, Gondré-Lewis T et al.

Journal of Biomedical Informatics (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Obol: Integrating Language and Meaning in Bio-Ontologies

Mungall C

Comparative and Functional Genomics (2004)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

AmiGO: online access to ontology and annotation data.

Carbon S, Ireland A, Mungall C, Shu S, Marshall B, Lewis S et al.

Bioinformatics (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

Smith C, Shu S, Mungall C, Karpen G

Science (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

{L}arge-scale trends in the evolution of gene structures within 11 animal genomes.

Yandell M, Mungall C, Smith C, Prochnik S, Kaminker J, Hartzell G et al.

PLoS Computational Biology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Scientist

Lawrence Berkeley Laboratory

June 2006 - Present

Education history

University of Edinburgh

PhD

January 2008 - September 2010 (2 years 8 months)