Data-Driven Techniques for Detecting Dynamical State Changes in Noisily Measured 3D Single-Molecule Trajectories
A new computational method for ambiguity assessment of solutions to assignment problems arising in target tracking
SPIE Defense, Security, and Sensing (2014)
Uncertainty Quantification of Discrete Association Problems in Image Sequence-based Tracking
Robust Hypothesis Tests for Detecting Statistical Evidence of 2D and 3D Interactions in Single-Molecule Measurements
Phys. Rev. E (2014)
Quantifying Transient 3D Dynamical Phenomena of Single mRNA Particles in Live Yeast Cell Measurements.
J Phys Chem B (2013)
Correcting for Bias of Molecular Confinement Parameters Induced by Small-Time-Series Sample Sizes in Single-Molecule Trajectories Containing Measurement Noise
Phys. Rev. E (2013)
Detecting clustered chem/bio signals in noisy sensor feeds using adaptive fusion
SPIE Defense, Security, and Sensing (2012)
A data-driven approach for processing heterogeneous categorical sensor signals
Proceedings of SPIE (2011)
Estimation and Inference of Diffusion Coefficients in Complex Biomolecular Environments
Journal of Chemical Theory and Computation (2011)
Detection of Subtle Dynamical Changes Induced by Unresolved Conformational Coordinates in Single-Molecule Trajectories via Goodness-of-Fit Tests
J Phys Chem B (2010)
P-Splines Using Derivative Information
Multiscale Modeling & Simulation (2010)
Analyzing single-molecule manipulation experiments.
Journal of molecular recognition : JMR (2009)
Local diffusion models for stochastic reacting systems: estimation issues in equation-free numerics
Molecular Simulation (2007)
Fitting Effective Diffusion Models to Data Associated with a “Glassy” Potential: Estimation, Classical Inference Procedures, and Some Heuristics
Multiscale Modeling & Simulation (2007)
On the use of local diffusion models for path ensemble averaging in potential of mean force computations.
J. Chem. Phys. (2007)
Data-driven approach to decomposing complex enzyme kinetics with surrogate models
Phys. Rev. E (2009)
Comment on “Reversing the perturbation in nonequilibrium molecular dynamics: An easy way to calculate the shear viscosity of fluids”
Phys. Rev. E (2002)
Extracting Kinetic and Stationary Distribution Information from Short MD Trajectories via a Collection of Surrogate Diffusion Models.
Journal of Chemical Theory and Computation (2009)
Approximating nonequilibrium processes using a collection of surrogate diffusion models.
J. Chem. Phys. (2008)
Coarse graining the Cyclic Lotka-Volterra Model : SSA and local maximum likelihood
Book Chapter: ISBN 364207149X (2006)
Using stochastic models calibrated from nanosecond nonequilibrium simulations to approximate mesoscale information.
J. Chem. Phys. (2009)
Quantifying DNA Melting Transitions Using Single-Molecule Force Spectroscopy.
Journal of physics. Condensed matter : an Institute of Physics journal (2009)
Quantifying multiscale noise sources in single-molecule time series.
J Phys Chem B (2009)
Founder and Chief Scientist
June 2014 - Present
Senior Research Scientist
September 2011 - December 2014 (3 years 3 months)
June 2010 - September 2011 (1 year 3 months)
Visiting Postdoctoral Fellow
Lawrence Berkeley National Lab
September 2009 - May 2010 (8 months)
November 2006 - July 2009 (2 years 8 months)
September 2001 - March 2007 (5 years 6 months)
August 1997 - May 2001 (3 years 9 months)