Christopher Calderon Ph.D.

Founder and Chief Scientist

Ursa Analytics

City
Denver, Colorado, United States
Discipline
Chemistry
Interests
Stochastic Modeling Time Series Analysis Tracking Chemical Detection Single-Molecule Dynamics
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  • 9 Followers

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Publications

  • Data-Driven Techniques for Detecting Dynamical State Changes in Noisily Measured 3D Single-Molecule Trajectories

    Calderon C

    Molecules (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A new computational method for ambiguity assessment of solutions to assignment problems arising in target tracking

    Mont A, Calderon C, Poore A

    SPIE Defense, Security, and Sensing (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Uncertainty Quantification of Discrete Association Problems in Image Sequence-based Tracking

    Mont A, Weigel A, Krapf D, Calderon C

    http://arxiv.org/abs/1304.5759 (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Robust Hypothesis Tests for Detecting Statistical Evidence of 2D and 3D Interactions in Single-Molecule Measurements

    Calderon C, Weiss L, Moerner W

    Phys. Rev. E (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Quantifying Transient 3D Dynamical Phenomena of Single mRNA Particles in Live Yeast Cell Measurements.

    Calderon C, Thompson M, Casolari J, Paffenroth R, Moerner W

    J Phys Chem B (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Correcting for Bias of Molecular Confinement Parameters Induced by Small-Time-Series Sample Sizes in Single-Molecule Trajectories Containing Measurement Noise

    Calderon C

    Phys. Rev. E (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Detecting clustered chem/bio signals in noisy sensor feeds using adaptive fusion

    Lundberg S, Calderon C, Paffenroth R

    SPIE Defense, Security, and Sensing (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A data-driven approach for processing heterogeneous categorical sensor signals

    Calderon C, Jones A, Lundberg S, Paffenroth R

    Proceedings of SPIE (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Estimation and Inference of Diffusion Coefficients in Complex Biomolecular Environments

    Calderon C

    Journal of Chemical Theory and Computation (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Detection of Subtle Dynamical Changes Induced by Unresolved Conformational Coordinates in Single-Molecule Trajectories via Goodness-of-Fit Tests

    Calderon C

    J Phys Chem B (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • P-Splines Using Derivative Information

    Calderon C, Martinez J, Carroll R, Sorensen D

    Multiscale Modeling & Simulation (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Analyzing single-molecule manipulation experiments.

    Calderon C, Harris N, Kiang C, Cox D

    Journal of molecular recognition : JMR (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Local diffusion models for stochastic reacting systems: estimation issues in equation-free numerics

    Calderon C

    Molecular Simulation (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Fitting Effective Diffusion Models to Data Associated with a “Glassy” Potential: Estimation, Classical Inference Procedures, and Some Heuristics

    Calderon C

    Multiscale Modeling & Simulation (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • On the use of local diffusion models for path ensemble averaging in potential of mean force computations.

    Calderon C

    J. Chem. Phys. (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Data-driven approach to decomposing complex enzyme kinetics with surrogate models

    Calderon C

    Phys. Rev. E (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Comment on “Reversing the perturbation in nonequilibrium molecular dynamics: An easy way to calculate the shear viscosity of fluids”

    Calderon C, Ashurst W

    Phys. Rev. E (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Extracting Kinetic and Stationary Distribution Information from Short MD Trajectories via a Collection of Surrogate Diffusion Models.

    Calderon C, Arora K

    Journal of Chemical Theory and Computation (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Approximating nonequilibrium processes using a collection of surrogate diffusion models.

    Calderon C, Chelli R

    J. Chem. Phys. (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Coarse graining the Cyclic Lotka-Volterra Model : SSA and local maximum likelihood

    Calderon C, Tsekouras G, Provata A, Kevrekidis I

    Book Chapter: ISBN 364207149X (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Using stochastic models calibrated from nanosecond nonequilibrium simulations to approximate mesoscale information.

    Calderon C, Janosi L, Kosztin I

    J. Chem. Phys. (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Quantifying DNA Melting Transitions Using Single-Molecule Force Spectroscopy.

    Calderon C, Chen W, Lin K, Harris N, Kiang C

    Journal of physics. Condensed matter : an Institute of Physics journal (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Quantifying multiscale noise sources in single-molecule time series.

    Calderon C, Harris N, Kiang C, Cox D

    J Phys Chem B (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Founder and Chief Scientist

Ursa Analytics

June 2014 - Present

Senior Research Scientist

Numerica Corporation

September 2011 - December 2014 (3 years 3 months)

Research Scientist

Numerica Corporation

June 2010 - September 2011 (1 year 3 months)

Visiting Postdoctoral Fellow

Lawrence Berkeley National Lab

September 2009 - May 2010 (8 months)

Postdoctoral Fellow

Rice University

November 2006 - July 2009 (2 years 8 months)

Education history

Princeton University

Ph.D.

September 2001 - March 2007 (5 years 6 months)

Purdue Univeristy

B.S.

August 1997 - May 2001 (3 years 9 months)