Christopher Calderon Ph.D.

Founder and Chief Scientist

Ursa Analytics

Location
Denver, Colorado, United States
Discipline
Chemistry
Interests
Stochastic Modeling Time Series Analysis Tracking Chemical Detection Single-Molecule Dynamics
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Publications

Data-Driven Techniques for Detecting Dynamical State Changes in Noisily Measured 3D Single-Molecule Trajectories

Calderon C

Molecules (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A new computational method for ambiguity assessment of solutions to assignment problems arising in target tracking

Mont A, Calderon C, Poore A

SPIE Defense, Security, and Sensing (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Uncertainty Quantification of Discrete Association Problems in Image Sequence-based Tracking

Mont A, Weigel A, Krapf D, Calderon C

http://arxiv.org/abs/1304.5759 (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Robust Hypothesis Tests for Detecting Statistical Evidence of 2D and 3D Interactions in Single-Molecule Measurements

Calderon C, Weiss L, Moerner W

Phys. Rev. E (2014)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Quantifying Transient 3D Dynamical Phenomena of Single mRNA Particles in Live Yeast Cell Measurements.

Calderon C, Thompson M, Casolari J, Paffenroth R, Moerner W

J Phys Chem B (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Correcting for Bias of Molecular Confinement Parameters Induced by Small-Time-Series Sample Sizes in Single-Molecule Trajectories Containing Measurement Noise

Calderon C

Phys. Rev. E (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Detecting clustered chem/bio signals in noisy sensor feeds using adaptive fusion

Lundberg S, Calderon C, Paffenroth R

SPIE Defense, Security, and Sensing (2012)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A data-driven approach for processing heterogeneous categorical sensor signals

Calderon C, Jones A, Lundberg S, Paffenroth R

Proceedings of SPIE (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Estimation and Inference of Diffusion Coefficients in Complex Biomolecular Environments

Calderon C

Journal of Chemical Theory and Computation (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Detection of Subtle Dynamical Changes Induced by Unresolved Conformational Coordinates in Single-Molecule Trajectories via Goodness-of-Fit Tests

Calderon C

J Phys Chem B (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

P-Splines Using Derivative Information

Calderon C, Martinez J, Carroll R, Sorensen D

Multiscale Modeling & Simulation (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Analyzing single-molecule manipulation experiments.

Calderon C, Harris N, Kiang C, Cox D

Journal of molecular recognition : JMR (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Local diffusion models for stochastic reacting systems: estimation issues in equation-free numerics

Calderon C

Molecular Simulation (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Fitting Effective Diffusion Models to Data Associated with a “Glassy” Potential: Estimation, Classical Inference Procedures, and Some Heuristics

Calderon C

Multiscale Modeling & Simulation (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

On the use of local diffusion models for path ensemble averaging in potential of mean force computations.

Calderon C

J. Chem. Phys. (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Data-driven approach to decomposing complex enzyme kinetics with surrogate models

Calderon C

Phys. Rev. E (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Comment on “Reversing the perturbation in nonequilibrium molecular dynamics: An easy way to calculate the shear viscosity of fluids”

Calderon C, Ashurst W

Phys. Rev. E (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Extracting Kinetic and Stationary Distribution Information from Short MD Trajectories via a Collection of Surrogate Diffusion Models.

Calderon C, Arora K

Journal of Chemical Theory and Computation (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Approximating nonequilibrium processes using a collection of surrogate diffusion models.

Calderon C, Chelli R

J. Chem. Phys. (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Coarse graining the Cyclic Lotka-Volterra Model : SSA and local maximum likelihood

Calderon C, Tsekouras G, Provata A, Kevrekidis I

Book Chapter: ISBN 364207149X (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Using stochastic models calibrated from nanosecond nonequilibrium simulations to approximate mesoscale information.

Calderon C, Janosi L, Kosztin I

J. Chem. Phys. (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Quantifying DNA Melting Transitions Using Single-Molecule Force Spectroscopy.

Calderon C, Chen W, Lin K, Harris N, Kiang C

Journal of physics. Condensed matter : an Institute of Physics journal (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Quantifying multiscale noise sources in single-molecule time series.

Calderon C, Harris N, Kiang C, Cox D

J Phys Chem B (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Founder and Chief Scientist

Ursa Analytics

June 2014 - Present

Senior Research Scientist

Numerica Corporation

September 2011 - December 2014 (3 years 3 months)

Research Scientist

Numerica Corporation

June 2010 - September 2011 (1 year 3 months)

Visiting Postdoctoral Fellow

Lawrence Berkeley National Lab

September 2009 - May 2010 (8 months)

Postdoctoral Fellow

Rice University

November 2006 - July 2009 (2 years 8 months)

Education history

Princeton University

Ph.D.

September 2001 - March 2007 (5 years 6 months)

Purdue Univeristy

B.S.

August 1997 - May 2001 (3 years 9 months)