Christopher Calderon

  • Ph.D.
  • Researcher
  • Founder and Chief Scientist
  • Ursa Analytics
  • Chemistry

Research Interests

Stochastic Modeling Time Series Analysis Tracking Chemical Detection Single-Molecule Dynamics

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Publications

Inferring Latent States and Refining Force Estimates via Hierarchical Dirichlet Process Modeling in Single Particle Tracking Experiments.

Calderon C, Bloom K

PloS ONE (2015)

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A new computational method for ambiguity assessment of solutions to assignment problems arising in target tracking

Mont A, Calderon C, Poore A

SPIE Defense, Security, and Sensing (2014)

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Data-Driven Techniques for Detecting Dynamical State Changes in Noisily Measured 3D Single-Molecule Trajectories

Calderon C

Molecules (2014)

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Robust Hypothesis Tests for Detecting Statistical Evidence of 2D and 3D Interactions in Single-Molecule Measurements

Calderon C, Weiss L, Moerner W

Phys. Rev. E (2014)

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Correcting for Bias of Molecular Confinement Parameters Induced by Small-Time-Series Sample Sizes in Single-Molecule Trajectories Containing Measurement Noise

Calderon C

Phys. Rev. E (2013)

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Quantifying Transient 3D Dynamical Phenomena of Single mRNA Particles in Live Yeast Cell Measurements.

Calderon C, Thompson M, Casolari J, Paffenroth R, Moerner W

J Phys Chem B (2013)

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Uncertainty Quantification of Discrete Association Problems in Image Sequence-based Tracking

Mont A, Weigel A, Krapf D, Calderon C

http://arxiv.org/abs/1304.5759 (2013)

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Detecting clustered chem/bio signals in noisy sensor feeds using adaptive fusion

Lundberg S, Calderon C, Paffenroth R

SPIE Defense, Security, and Sensing (2012)

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A data-driven approach for processing heterogeneous categorical sensor signals

Calderon C, Jones A, Lundberg S, Paffenroth R

Proceedings of SPIE (2011)

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Estimation and Inference of Diffusion Coefficients in Complex Biomolecular Environments

Calderon C

Journal of Chemical Theory and Computation (2011)

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Detection of Subtle Dynamical Changes Induced by Unresolved Conformational Coordinates in Single-Molecule Trajectories via Goodness-of-Fit Tests

Calderon C

J Phys Chem B (2010)

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P-Splines Using Derivative Information

Calderon C, Martinez J, Carroll R, Sorensen D

Multiscale Modeling & Simulation (2010)

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Analyzing single-molecule manipulation experiments.

Calderon C, Harris N, Kiang C, Cox D

Journal of molecular recognition : JMR (2009)

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Data-driven approach to decomposing complex enzyme kinetics with surrogate models

Calderon C

Phys. Rev. E (2009)

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Extracting Kinetic and Stationary Distribution Information from Short MD Trajectories via a Collection of Surrogate Diffusion Models.

Calderon C, Arora K

Journal of Chemical Theory and Computation (2009)

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Quantifying DNA Melting Transitions Using Single-Molecule Force Spectroscopy.

Calderon C, Chen W, Lin K, Harris N, Kiang C

Journal of physics. Condensed matter : an Institute of Physics journal (2009)

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Quantifying multiscale noise sources in single-molecule time series.

Calderon C, Harris N, Kiang C, Cox D

J Phys Chem B (2009)

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Using stochastic models calibrated from nanosecond nonequilibrium simulations to approximate mesoscale information.

Calderon C, Janosi L, Kosztin I

J. Chem. Phys. (2009)

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Approximating nonequilibrium processes using a collection of surrogate diffusion models.

Calderon C, Chelli R

J. Chem. Phys. (2008)

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Fitting Effective Diffusion Models to Data Associated with a “Glassy” Potential: Estimation, Classical Inference Procedures, and Some Heuristics

Calderon C

Multiscale Modeling & Simulation (2007)

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Local diffusion models for stochastic reacting systems: estimation issues in equation-free numerics

Calderon C

Molecular Simulation (2007)

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On the use of local diffusion models for path ensemble averaging in potential of mean force computations.

Calderon C

J. Chem. Phys. (2007)

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Coarse graining the Cyclic Lotka-Volterra Model : SSA and local maximum likelihood

Calderon C, Tsekouras G, Provata A, Kevrekidis I

Book Chapter: ISBN 364207149X (2006)

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Comment on “Reversing the perturbation in nonequilibrium molecular dynamics: An easy way to calculate the shear viscosity of fluids”

Calderon C, Ashurst W

Phys. Rev. E (2002)

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Professional experience

Founder and Chief Scientist

Ursa Analytics

June 2014 - Present

Senior Research Scientist

Numerica Corporation

September 2011 - December 2014 (3 years 3 months)

Research Scientist

Numerica Corporation

June 2010 - September 2011 (1 year 3 months)

Visiting Postdoctoral Fellow

E O Lawrence Berkeley National Laboratory

September 2009 - May 2010 (8 months)

Postdoctoral Fellow

Rice University

November 2006 - July 2009 (2 years 8 months)

Education history

Princeton University

Ph.D.

September 2001 - March 2007 (5 years 6 months)

Purdue Univeristy

B.S.

August 1997 - May 2001 (3 years 9 months)