Eoin Brodie PhD

Staff Scientist

Lawrence Berkeley National Laboratory

Location
Berkeley, California, United States
Discipline
Environmental Sciences
Interests
Microbiology Climate Change Bioremediation Diagnostics Bioinformatics Metagenomics
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Mendeley Advisor

Publications

Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus

Hu P, Brodie E, Suzuki Y, McAdams H

Journal of (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Structure of the human gastric bacterial community in relation to Helicobacter pylori status.

Maldonado-Contreras A, Goldfarb K, Godoy-Vitorino F, Karaoz U, Contreras M, Blaser M et al.

The ISME journal (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The ISME Journal - A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells

Wrighton K, Agbo P, Warnecke F, Weber K, Brodie E, DeSantis T et al.

The ISME journal (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment

DeSantis T, Brodie E, Moberg J, Zubieta I, Piceno Y, Andersen G

Microbial ecology (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Reoxidation of bioreduced uranium under reducing conditions

Wan J, Tokunaga T, Brodie E, Wang Z, Zheng Z, Herman D et al.

Environmental science \& technology (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Seasonal influences on fungal community structure in unimproved and improved upland grassland soils

Kennedy N, Brodie E, Connolly J, Clipson N

Canadian journal of microbiology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Impact of lime, nitrogen and plant species on bacterial community structure in grassland microcosms

Kennedy N, Brodie E, Connolly J, Clipson N

Environmental microbiology (2004)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Bacterial community dynamics across a floristic gradient in a temperate upland grassland ecosystem

Brodie E, Edwards S, Clipson N

Microbial ecology (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Soil fungal community structure in a temperate upland grassland soil

Brodie E, Edwards S, Clipson N

FEMS microbiology ecology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Exploration for facultative endosymbionts of glassy-winged sharpshooter (Hemiptera: Cicadellidae)

Curley C, Brodie E, Lechner M, Purcell A

Annals of the Entomological Society of America (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Avian incubation inhibits growth and diversification of bacterial assemblages on eggs

Shawkey M, Firestone M, Brodie E, Beissinger S

PLoS One (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland

Cruz-Mart\'\inez K, Suttle K, Brodie E, Power M, Andersen G, Banfield J

The ISME Journal (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Uranium reduction in sediments under diffusion-limited transport of organic carbon

Tokunaga T, Wan J, Pena J, Brodie E, Firestone M, Hazen T et al.

Environ. Sci. Technol (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Selective progressive response of soil microbial community to wild oat roots

DeAngelis K, Brodie E, DeSantis T, Andersen G, Lindow S, Firestone M

The ISME Journal (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Temporal transcriptomic microarray analysis of" Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase

Johnson D, Brodie E, Hubbard A, Andersen G, Zinder S, Alvarez-Cohen L

Applied and environmental microbiology (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Environmental genomics reveals a single-species ecosystem deep within Earth

Chivian D, Brodie E, Alm E, Culley D, Dehal P, DeSantis T et al.

Science (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Role of the rapA gene in controlling antibiotic resistance of Escherichia coli biofilms

Lynch S, Dixon L, Benoit M, Brodie E, Keyhan M, Hu P et al.

Antimicrobial agents and chemotherapy (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Comparative genomics of" Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced" Dehalococcoides" strains

West K, Johnson D, Hu P, DeSantis T, Brodie E, Lee P et al.

Applied and environmental microbiology (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells

Wrighton K, Agbo P, Warnecke F, Weber K, Brodie E, DeSantis T et al.

The ISME Journal (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

Sunagawa S, DeSantis T, Piceno Y, Brodie E, DeSalvo M, Voolstra C et al.

The ISME Journal (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Environmental microarray analyses of Antarctic soil microbial communities

Yergeau E, Schoondermark-Stolk S, Brodie E, Déjean S, DeSantis T, Gonçalves O et al.

The ISME Journal (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Induction of intestinal Th17 cells by segmented filamentous bacteria

Ivanov I, Atarashi K, Manel N, Brodie E, Shima T, Karaoz U et al.

Cell (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Role and regulation of $\$sigma$\$ S in general resistance conferred by low-shear simulated microgravity in Escherichia coli

Lynch S, Brodie E, Matin A

Journal of bacteriology (2004)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa

Flanagan J, Brodie E, Weng L, Lynch S, Garcia O, Brown R et al.

Journal of clinical microbiology (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus

Hu P, Brodie E, Suzuki Y, McAdams H, Andersen G

Journal of bacteriology (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Long-term sustainability of a high-energy, low-diversity crustal biome

Lin L, Wang P, Rumble D, Lippmann-Pipke J, Boice E, Pratt L et al.

Science(Washington) (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment

DeSantis T, Brodie E, Moberg J, Zubieta I, Piceno Y, Andersen G

Microbial ecology (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Urban aerosols harbor diverse and dynamic bacterial populations

Brodie E, DeSantis T, Parker J, Zubietta I, Piceno Y, Andersen G

Proceedings of the National Academy of Sciences (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Environmental whole-genome amplification to access microbial populations in contaminated sediments

Abulencia C, Wyborski D, Garcia J, Podar M, Chen W, Chang S et al.

Applied and environmental microbiology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation

Brodie E, DeSantis T, Joyner D, Baek S, Larsen J, Andersen G et al.

Applied and environmental microbiology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

DeSantis Jr T, Hugenholtz P, Keller K, Brodie E, Larsen N, Piceno Y et al.

Nucleic Acids Research (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

DeSantis T, Hugenholtz P, Larsen N, Rojas M, Brodie E, Keller K et al.

Applied and Environmental Microbiology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Staff Scientist

Lawrence Berkeley National Laboratory

May 2009 - Present

Education history

University College Dublin

Ph.D. (Microbial Ecology)

September 1996 - April 2001 (4 years 7 months)

University College Dublin

BSc

August 1992 - May 1996 (3 years 9 months)