Eoin Brodie PhD

Staff Scientist

Lawrence Berkeley National Laboratory

Location
Berkeley, California, United States
Discipline
Environmental Sciences
Interests
Microbiology Climate Change Bioremediation Diagnostics Bioinformatics Metagenomics
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Mendeley Advisor
  • 31 Followers

Publications

  • Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus

    Hu P, Brodie E, Suzuki Y, McAdams H

    Journal of (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Structure of the human gastric bacterial community in relation to Helicobacter pylori status.

    Maldonado-Contreras A, Goldfarb K, Godoy-Vitorino F, Karaoz U, Contreras M, Blaser M et al.

    The ISME journal (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The ISME Journal - A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells

    Wrighton K, Agbo P, Warnecke F, Weber K, Brodie E, DeSantis T et al.

    The ISME journal (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment

    DeSantis T, Brodie E, Moberg J, Zubieta I, Piceno Y, Andersen G

    Microbial ecology (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Reoxidation of bioreduced uranium under reducing conditions

    Wan J, Tokunaga T, Brodie E, Wang Z, Zheng Z, Herman D et al.

    Environmental science \& technology (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Seasonal influences on fungal community structure in unimproved and improved upland grassland soils

    Kennedy N, Brodie E, Connolly J, Clipson N

    Canadian journal of microbiology (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Impact of lime, nitrogen and plant species on bacterial community structure in grassland microcosms

    Kennedy N, Brodie E, Connolly J, Clipson N

    Environmental microbiology (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Bacterial community dynamics across a floristic gradient in a temperate upland grassland ecosystem

    Brodie E, Edwards S, Clipson N

    Microbial ecology (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Soil fungal community structure in a temperate upland grassland soil

    Brodie E, Edwards S, Clipson N

    FEMS microbiology ecology (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Exploration for facultative endosymbionts of glassy-winged sharpshooter (Hemiptera: Cicadellidae)

    Curley C, Brodie E, Lechner M, Purcell A

    Annals of the Entomological Society of America (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Avian incubation inhibits growth and diversification of bacterial assemblages on eggs

    Shawkey M, Firestone M, Brodie E, Beissinger S

    PLoS One (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland

    Cruz-Mart\'\inez K, Suttle K, Brodie E, Power M, Andersen G, Banfield J

    The ISME Journal (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Uranium reduction in sediments under diffusion-limited transport of organic carbon

    Tokunaga T, Wan J, Pena J, Brodie E, Firestone M, Hazen T et al.

    Environ. Sci. Technol (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Selective progressive response of soil microbial community to wild oat roots

    DeAngelis K, Brodie E, DeSantis T, Andersen G, Lindow S, Firestone M

    The ISME Journal (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Temporal transcriptomic microarray analysis of" Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase

    Johnson D, Brodie E, Hubbard A, Andersen G, Zinder S, Alvarez-Cohen L

    Applied and environmental microbiology (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Environmental genomics reveals a single-species ecosystem deep within Earth

    Chivian D, Brodie E, Alm E, Culley D, Dehal P, DeSantis T et al.

    Science (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Role of the rapA gene in controlling antibiotic resistance of Escherichia coli biofilms

    Lynch S, Dixon L, Benoit M, Brodie E, Keyhan M, Hu P et al.

    Antimicrobial agents and chemotherapy (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Comparative genomics of" Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced" Dehalococcoides" strains

    West K, Johnson D, Hu P, DeSantis T, Brodie E, Lee P et al.

    Applied and environmental microbiology (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells

    Wrighton K, Agbo P, Warnecke F, Weber K, Brodie E, DeSantis T et al.

    The ISME Journal (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

    Sunagawa S, DeSantis T, Piceno Y, Brodie E, DeSalvo M, Voolstra C et al.

    The ISME Journal (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Environmental microarray analyses of Antarctic soil microbial communities

    Yergeau E, Schoondermark-Stolk S, Brodie E, Déjean S, DeSantis T, Gonçalves O et al.

    The ISME Journal (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Induction of intestinal Th17 cells by segmented filamentous bacteria

    Ivanov I, Atarashi K, Manel N, Brodie E, Shima T, Karaoz U et al.

    Cell (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Role and regulation of $\$sigma$\$ S in general resistance conferred by low-shear simulated microgravity in Escherichia coli

    Lynch S, Brodie E, Matin A

    Journal of bacteriology (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa

    Flanagan J, Brodie E, Weng L, Lynch S, Garcia O, Brown R et al.

    Journal of clinical microbiology (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus

    Hu P, Brodie E, Suzuki Y, McAdams H, Andersen G

    Journal of bacteriology (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Long-term sustainability of a high-energy, low-diversity crustal biome

    Lin L, Wang P, Rumble D, Lippmann-Pipke J, Boice E, Pratt L et al.

    Science(Washington) (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment

    DeSantis T, Brodie E, Moberg J, Zubieta I, Piceno Y, Andersen G

    Microbial ecology (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Urban aerosols harbor diverse and dynamic bacterial populations

    Brodie E, DeSantis T, Parker J, Zubietta I, Piceno Y, Andersen G

    Proceedings of the National Academy of Sciences (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Environmental whole-genome amplification to access microbial populations in contaminated sediments

    Abulencia C, Wyborski D, Garcia J, Podar M, Chen W, Chang S et al.

    Applied and environmental microbiology (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation

    Brodie E, DeSantis T, Joyner D, Baek S, Larsen J, Andersen G et al.

    Applied and environmental microbiology (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

    DeSantis Jr T, Hugenholtz P, Keller K, Brodie E, Larsen N, Piceno Y et al.

    Nucleic Acids Research (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

    DeSantis T, Hugenholtz P, Larsen N, Rojas M, Brodie E, Keller K et al.

    Applied and Environmental Microbiology (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Staff Scientist

Lawrence Berkeley National Laboratory

May 2009 - Present

Education history

University College Dublin

Ph.D. (Microbial Ecology)

September 1996 - April 2001 (4 years 7 months)

University College Dublin

BSc

August 1992 - May 1996 (3 years 9 months)