Jonathan Eisen Ph.D.

Location
Davis, California, United States
Discipline
Biological Sciences
Interests
Evolution, genomics, DNA repair, symbioses, metagenomics, microbiology, halophiles, archaea, phylogeny, novelty, microbial communities, host-microbe interactions, phylogenetics, forensics, bioinformatics, computational biology, microbiomes, ecology, micr
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About

My research focuses on the mechanisms underlying the origin of novelty (how new processes and functions originate). Most of my work involves the use of high throughput DNA sequencing methods to characterize microbes and then the use and development of computational methods to analyze this type of type. In particular, my computational work has focused on integrating evolutionary analysis with genome analysis – so called “phylogenomics.” Previously, I applied this phylogenomic approach to cultured organisms, such as those from extreme environments and those with key properties as they relate to evolution or global climate cycles. Currently we are using sequencing and phylogenomic methods to study microbes directly in their natural habitats (i.e., without culturing). In particular we focus on how communities of microbes interact with each other or with planbt and animal hosts to create new functions.

In addition to research, I is also a vocal advocate for "Open Access'" to scientific publications and is the Academic Editor in Chief of PLoS Biology. I am also a active and (occasionally) award winning blogger/microblogger (e.g., http://phylogenomics.blogspot.com http://twitter.com/phylogenomics).

Prior to moving to U. C. Davis I was on the faculty of The Institute for Genomic Research (TIGR) in Rockville, MD. I earned my PhD in Biological Sciences from Stanford University where I worked on the evolution of DNA repair processes in the lab of Philip C. Hanawalt. I earned my AB in Biology from Harvard College where I worked with Prof. Colleen Cavanaugh and Prof. Fakhri Bazzaz.
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Publications

  • Bacterial communities of diverse Drosophila species: Ecological context of a host-microbe model system

    Chandler J, Lang J, Bhatnagar S, Eisen J, Kopp A

    PLoS Genetics (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices

    Lang J, Darling A, Eisen J

    PLoS ONE (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • An automated phylogenetic tree-based Small subunit rRNA Taxonomy and Alignment Pipeline (STAP)

    Wu D, Hartman A, Ward N, Eisen J

    PLoS ONE (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Accounting for alignment uncertainty in phylogenomics

    Wu M, Chatterji S, Eisen J

    PLoS ONE (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome Sequences of Extended-Spectrum ␤ -Lactamase- Producing Escherichia coli Strains Isolated from Patients in Lebanon

    Tokajian S, Eisen J, Jospin G, Farra A, Coil A

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria).

    Coil D, Doctor J, Lang J, Darling A, Eisen J

    Genome announcements (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome Sequence of Dietzia sp. Strain UCD-THP (Phylum Actinobacteria).

    Diep A, Lang J, Darling A, Eisen J, Coil D

    Genome announcements (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobacteria).

    Flanagan J, Lang J, Darling A, Eisen J, Coil D

    Genome announcements (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome Sequence of Leucobacter sp. Strain UCD-THU (Phylum Actinobacteria).

    Holland-Moritz H, Bevans D, Lang J, Darling A, Eisen J, Coil D

    Genome announcements (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Insights into the phylogeny and coding potential of microbial dark matter.

    Rinke C, Schwientek P, Sczyrba A, Ivanova N, Anderson I, Cheng J et al.

    Nature (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).

    Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S et al.

    Standards in genomic sciences (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)).

    Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Han C et al.

    Standards in genomic sciences (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).

    Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S et al.

    Standards in genomic sciences (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Trep

    Abt B, Göker M, Scheuner C, Han C, Lu M, Misra M et al.

    Standards in genomic sciences (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.

    Castelle C, Hug L, Wrighton K, Thomas B, Williams K, Wu D et al.

    Nature communications (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift.

    Liolos K, Abt B, Scheuner C, Teshima H, Held B, Lapidus A et al.

    Standards in genomic sciences (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).

    Huntemann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N et al.

    Standards in genomic sciences (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva.

    Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N et al.

    Standards in genomic sciences (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Mauve assembly metrics.

    Darling A, Tritt A, Eisen J, Facciotti M

    Bioinformatics (Oxford, England) (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Systematic identification of gene families for use as "markers" for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups.

    Wu D, Jospin G, Eisen J

    PLoS ONE (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.

    Glass E, Dribinsky Y, Yilmaz P, Levin H, Van Pelt R, Wendel D et al.

    The ISME journal (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome Sequence of the Arsenate-Respiring Bacterium Chrysiogenes arsenatis Strain DSM 11915.

    Coil D, Lo J, Chen R, Ward N, Robb F, Eisen J

    Genome announcements (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Open science and reporting animal studies: who's accountable?

    Eisen J, Ganley E, MacCallum C

    PLoS biology (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance.

    Kembel S, Wu M, Eisen J, Green J

    PLoS computational biology (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh.

    Wilbanks E, Jaekel U, Salman V, Humphrey P, Eisen J, Facciotti M et al.

    Environmental microbiology (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence.

    Rands C, Darling A, Fujita M, Kong L, Webster M, Clabaut C et al.

    BMC genomics (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio.

    Palaniappan K, Meier-Kolthoff J, Teshima H, Nolan M, Lapidus A, Tice H et al.

    Standards in genomic sciences (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

    Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl.

    Anderson I, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio T et al.

    Standards in genomic sciences (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)).

    Anderson I, Munk C, Lapidus A, Nolan M, Lucas S, Tice H et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The phylogenetic diversity of metagenomes.

    Kembel S, Eisen J, Pollard K, Green J

    PloS one (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12.

    Coil D, Badger J, Forberger H, Riggs F, Madupu R, Fedorova N et al.

    Genome announcements (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)).

    Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome Sequence of Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae Isolated from a Patient in Lebanon.

    Tokajian S, Eisen J, Jospin G, Farra A, Coil D

    Genome announcements (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)).

    Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft genome sequence of an Actinobacterium, Brachybacterium muris strain UCD-AY4.

    Lo J, Lang J, Darling A, Eisen J, Coil D

    Genome announcements (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Isolated from Drosophila suzukii Larvae.

    Dunitz M, James P, Jospin G, Eisen J, Coil D, Chandler J

    Genome announcements (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon.

    Tokajian S, Eisen J, Jospin G, Coil D

    Genome announcements (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria).

    Bendiks Z, Lang J, Darling A, Eisen J, Coil D

    Genome announcements (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Badomics words and the power and peril of the ome-meme.

    Eisen J

    GigaScience (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265.

    Alexiev A, Coil D, Badger J, Enticknap J, Ward N, Robb F et al.

    Genome announcements (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The impact of Helicobacter pylori infection on the gastric microbiota of the rhesus macaque.

    Martin M, Bhatnagar S, George M, Paster B, Canfield D, Eisen J et al.

    PloS one (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Expert failure: re-evaluating research assessment.

    Eisen J, Maccallum C, Neylon C

    PLoS biology (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • PhyloSift: phylogenetic analysis of genomes and metagenomes.

    Darling A, Jospin G, Lowe E, IV F, Matsen F, Bik H et al.

    PeerJ (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Coriobacterium glomerans type strain (PW2 T ) from the midgut of Pyrrhocoris apterus L. (red soldier bug)

    Stackebrandt E, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N et al.

    Standards in Genomic Sciences; Vol 8, No 1 (2013): Standards in Genomic Sciences (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Analysis of Deinococcus radiodurans’ transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance

    Tanaka M, Earl A, Howell HA, Park M-J, Eisen JA, Peterson SN B

    Genetics (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the Q-fever pathogen Coxiellaburnetii

    Seshadri R, Paulsen I, Eisen J, Read T, Nelson K, Nelson W et al.

    Proc Natl Acad Sci U S A (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Halorhabdus utahensis type strain (AX-2T)

    Anderson I, Tindall B, Pomrenke H, Göker M, Lapidus A, Nolan M et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262).

    Woyke T, Chertkov O, Lapidus A, Nolan M, Lucas S, Del Rio T et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.

    Shih P, Wu D, Latifi A, Axen S, Fewer D, Talla E et al.

    Proceedings of the National Academy of Sciences of the United States of America (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.

    Shih P, Wu D, Latifi A, Axen S, Fewer D, Talla E et al.

    Proceedings of the National Academy of Sciences of the United States of America (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • An integrated pipeline for de novo assembly of microbial genomes.

    Tritt A, Eisen J, Facciotti M, Darling A

    PloS one (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • An integrated pipeline for de novo assembly of microbial genomes.

    Tritt A, Eisen J, Facciotti M, Darling A

    PloS one (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factorization.

    Jiang X, Langille M, Neches R, Elliot M, Levin S, Eisen J et al.

    PloS one (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis.

    Traag B, Pugliese A, Eisen J, Losick R

    Journal of bacteriology (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource.

    Sharpton T, Jospin G, Wu D, Langille M, Pollard K, Eisen J

    BMC bioinformatics (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10).

    Lapidus A, Chertkov O, Nolan M, Lucas S, Hammon N, Deshpande S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21).

    Chang Y, Land M, Hauser L, Chertkov O, Del Rio T, Nolan M et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Raine

    Klenk H, Lapidus A, Chertkov O, Copeland A, Del Rio T, Nolan M et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila.

    Fass J, Joshi N, Couvillion M, Bowen J, Gorovsky M, Hamilton E et al.

    G3 (Bethesda, Md.) (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)).

    Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng J et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent.

    Göker M, Daligault H, Mwirichia R, Lapidus A, Lucas S, Deshpande S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney.

    Copeland A, Gu W, Yasawong M, Lapidus A, Lucas S, Deshpande S et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)).

    Han C, Kotsyurbenko O, Chertkov O, Held B, Lapidus A, Nolan M et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)).

    Copeland A, Zhang X, Misra M, Lapidus A, Nolan M, Lucas S et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T)).

    Anderson I, Saunders E, Lapidus A, Nolan M, Lucas S, Tice H et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)).

    Anderson I, Held B, Lapidus A, Nolan M, Lucas S, Tice H et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)).

    Huntemann M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerocha

    Abt B, Han C, Scheuner C, Lu M, Lapidus A, Nolan M et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).

    Mavromatis K, Chertkov O, Lapidus A, Nolan M, Lucas S, Tice H et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)).

    Göker M, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).

    Copeland A, Zeytun A, Yassawong M, Nolan M, Lucas S, Hammon N et al.

    Standards in genomic sciences (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux

    Lynch E, Langille M, Darling A, Wilbanks E, Haltiner C, Shao K et al.

    PLoS ONE (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Yeast communities of diverse Drosophila species: comparison of two symbiont groups in the same hosts.

    Chandler J, Eisen J, Kopp A

    Applied and environmental microbiology (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20).

    Pati A, Gronow S, Lu M, Lapidus A, Nolan M, Lucas S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113).

    Liolios K, Sikorski J, Lu M, Nolan M, Lapidus A, Lucas S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov

    Klenk H, Lapidus A

    Standards in genomic … (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

    Monier A, Welsh R, Gentemann C, Weinstock G, Sodergren E, Armbrust E et al.

    Environmental Microbiology (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

    Monier A, Welsh R, Gentemann C, Weinstock G, Sodergren E, Armbrust E et al.

    Environmental Microbiology (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Bacterial Communities of Diverse Drosophila Species: Ecological Context of a Host–Microbe Model System

    Chandler J, Morgan Lang J, Bhatnagar S, Eisen J, Kopp A

    PLoS Genetics (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)).

    Huntemann M, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSLT)

    Ivanova N, Sikorski J, Chertkov O, Nolan M, Lucas S, Hammon N et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1T)

    Anderson I, Sikorski J, Zeytun A, Nolan M, Lapidus A, Lucas S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Mahella australiensis type strain (50-1 BON).

    Sikorski J, Teshima H, Nolan M, Lucas S, Hammon N, Deshpande S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Tsukamurella paurometabola type strain (no. 33).

    Munk A, Lapidus A, Lucas S, Nolan M, Tice H, Cheng J et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Haliscomenobacter hydrossis type strain (O).

    Daligault H, Lapidus A, Zeytun A, Nolan M, Lucas S, Del Rio T et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Treponema succinifaciens type strain (6091).

    Han C, Gronow S, Teshima H, Lapidus A, Nolan M, Lucas S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).

    Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A).

    Anderson I, Göker M, Nolan M, Lucas S, Hammon N, Deshpande S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).

    Göker M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).

    Zeytun A, Sikorski J, Nolan M, Lapidus A, Lucas S, Han J et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845).

    Mavromatis K, Lu M, Misra M, Lapidus A, Nolan M, Lucas S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Desulfurococcus mucosus type strain (O7/1).

    Wirth R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Marivirga tractuosa type strain (H-43).

    Pagani I, Chertkov O, Lapidus A, Lucas S, Del Rio T, Tice H et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Deinococcus maricopensis type strain (LB-34).

    Pukall R, Zeytun A, Lucas S, Lapidus A, Hammon N, Deshpande S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Bacteroides salanitronis type strain (BL78).

    Gronow S, Held B, Lucas S, Lapidus A, Del Rio T, Nolan M et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Odoribacter splanchnicus type strain (1651/6).

    Göker M, Gronow S, Zeytun A, Nolan M, Lucas S, Lapidus A et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Oceanithermus profundus type strain (506T)

    Pati A, Zhang X, Lapidus A, Nolan M, Lucas S, Del Rio T et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Cellulophaga lytica type strain (LIM-21).

    Pati A, Abt B, Teshima H, Nolan M, Lapidus A, Lucas S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139).

    Land M, Held B, Gronow S, Abt B, Lucas S, Del Rio T et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genomics of Emerging Infectious Disease: A PLoS Collection

    Eisen J, MacCallum C

    PLoS Biology (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Sequence characterization and comparative analysis of three plasmids isolated from environmental Vibrio spp

    Hazen T, Wu D, Eisen J, Sobecky P

    Appl Environ Microbiol (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Use of HAPPY mapping for the higher order assembly of the Tetrahymena genome

    Hamilton E, Dear P, Rowland T, Saks K, Eisen J, Orias E

    Genomics (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella

    Schmidt E, Nelson J, Rasko D, Sudek S, Eisen J, Haygood M et al.

    Proc Natl Acad Sci U S A (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus capsulatus (Bath)

    PLoS Biology (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Modeling bacterial evolution with comparative-genome-based marker systems: application to Mycobacterium tuberculosis evolution and pathogenesis

    Alland D, Whittam T, Murray M, Cave M, Hazbon M, Dix K et al.

    J Bacteriol (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

    Nelson K, Weinel C, Paulsen I, Dodson R, Hilbert H, Martins dos Santos V et al.

    Environ Microbiol (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Phylogenetic analysis and gene functional predictions: phylogenomics in action

    Eisen J, Wu M

    Theor Popul Biol (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of a virulent isolate of Streptococcus pneumoniae

    Tettelin H, Nelson K, Paulsen I, Eisen J, Read T, Peterson S et al.

    Science (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Caulobacter crescentus

    Nierman W, Feldblyum T, Laub M, Paulsen I, Nelson K, Eisen J et al.

    Proc Natl Acad Sci U S A (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome of Thermotoga maritima MSB8

    Nelson K, Eisen J, Fraser C

    Methods Enzymol (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A case for evolutionary genomics and the comprehensive examination of sequence biodiversity

    Pollock D, Eisen J, Doggett N, Cummings M

    Mol Biol Evol (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Cloning and characterization of HARP/SMARCAL1: a prokaryotic HepA- related SNF2 helicase protein from human and mouse

    Coleman M, Eisen J, Mohrenweiser H

    Genomics (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Aggregating, Tagging and Integrating Biodiversity Research

    Mindell D, Fisher B, Roopnarine P, Eisen J, Mace G, Page R et al.

    PLoS ONE (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Mauve Assembly Metrics

    Darling A, Tritt A, Eisen J, Facciotti M

    Bioinformatics (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The value of complete microbial genome sequencing (you get what you pay for)

    Fraser C, Eisen J

    Journal of … (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Truepera radiovictrix type strain (RQ-24T)

    Ivanova N, Rohde C, Munk C, Nolan M, Lucas S, Del Rio T et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Drivers of bacterial {beta}-diversity depend on spatial scale.

    Martiny J, Eisen J, Penn K, Allison S, Horner-Devine C

    Proceedings of the National Academy of Sciences of the United States of America (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Drivers of bacterial beta-diversity depend on spatial scale

    Martiny J, Eisen J, Penn K, Allison S, Horner-Devine M

    Proceedings of the National Academy of Sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Cellulophaga algicola type strain (IC166).

    Abt B, Lu M, Misra M, Han C, Nolan M, Lucas S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Bacteroides helcogenes type strain (P 36-108).

    Pati A, Gronow S, Zeytun A, Lapidus A, Nolan M, Hammon N et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families

    Yooseph S, Sutton G, Rusch D, Halpern A, Williamson S, Remington K et al.

    PLoS Biol (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic Elements

    Wu M, Sun L, Vamathevan J, Riegler M, Deboy R, Brownlie J et al.

    PLoS Biol (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Second gene for gonadotropin-releasing hormone in humans: chromosomal localization, expression and evolution

    White R, Eisen J, Kasten T, Fernald R

    Society For Neuroscience Abstracts (1997)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Mechanistic basis of microsatellite instability

    Eisen J

    Microsatellites: Evolution and Applications (1999)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • CompostBin: a DNA composition-based algorithm for binning environmental shotgun reads.

    Chatterji S, Yamazaki I, Bai Z, Eisen J

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Going to extremes

    Eisen J

    Trends in Genetics (1999)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Introducing W.A.T.E.R.S.: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences

    Hartman A, Riddle S, McPhillips T, Ludäscher B, Eisen J, Ludascher B

    BMC Bioinformatics (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Isosphaera pallida type strain (IS1B).

    Göker M, Cleland D, Saunders E, Lapidus A, Nolan M, Lucas S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Weeksella virosa type strain (9751).

    Lang E, Teshima H, Lucas S, Lapidus A, Hammon N, Deshpande S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Paludibacter propionicigenes type strain (WB4).

    Gronow S, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Thermomonospora curvata type strain (B9).

    Chertkov O, Sikorski J, Nolan M, Lapidus A, Lucas S, Del Rio T et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Desulfobulbus propionicus type strain (1pr3).

    Pagani I, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1).

    Pitluck S, Sikorski J, Zeytun A, Lapidus A, Nolan M, Lucas S et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Leadbetterella byssophila type strain (4M15).

    Abt B, Teshima H, Lucas S, Lapidus A, Del Rio T, Nolan M et al.

    Standards in genomic sciences (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees

    Wu D, Wu M, Halpern A, Rusch D, Yooseph S, Frazier M et al.

    PLoS ONE (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Kytococcus sedentarius type strain (541).

    Sims D, Brettin T, Detter J, Han C, Lapidus A, Copeland A et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10T)

    Lapidus A, Pukall R, LaButtii K, Copeland A, Del Rio T, Nolan M et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122).

    Land M, Pukall R, Abt B, Göker M, Rohde M, Glavina Del Rio T et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Desulfomicrobium baculatum type strain (X).

    Copeland A, Spring S, Göker M, Schneider S, Lapidus A, Del Rio T et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP).

    Clum A, Nolan M, Lang E, Glavina Del Rio T, Tice H, Copeland A et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3).

    Han C, Spring S, Lapidus A, Del Rio T, Tice H, Copeland A et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Cryptobacterium curtum type strain (12-3).

    Mavrommatis K, Pukall R, Rohde C, Chen F, Sims D, Brettin T et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).

    Mavrommatis K, Gronow S, Saunders E, Land M, Lapidus A, Copeland A et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Catenulispora acidiphila type strain (ID 139908).

    Copeland A, Lapidus A, Glavina Del Rio T, Nolan M, Lucas S, Chen F et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Leptotrichia buccalis type strain (C-1013-bT)

    Ivanova N, Gronow S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Saccharomonospora viridis type strain (P101T)

    Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Halogeometricum borinquense type strain (PR3).

    Malfatti S, Tindall B, Schneider S, Fähnrich R, Lapidus A, Labuttii K et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Anaerococcus prevotii type strain (PC1).

    Labutti K, Pukall R, Steenblock K, Glavina Del Rio T, Tice H, Copeland A et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Atopobium parvulum type strain (IPP 1246).

    Copeland A, Sikorski J, Lapidus A, Nolan M, Del Rio T, Lucas S et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21).

    Munk C, Lapidus A, Copeland A, Jando M, Mayilraj S, Glavina Del Rio T et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575).

    Spring S, Lapidus A, Schröder M, Gleim D, Sims D, Meincke L et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134).

    Pukall R, Gehrich-Schröter G, Lapidus A, Nolan M, Glavina Del Rio T, Lucas S et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Rhodothermus marinus type strain (R-10).

    Nolan M, Tindall B, Pomrenke H, Lapidus A, Copeland A, Glavina Del Rio T et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Streptobacillus moniliformis type strain (9901).

    Nolan M, Gronow S, Lapidus A, Ivanova N, Copeland A, Lucas S et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Pirellula staleyi type strain (ATCC 27377).

    Clum A, Tindall B, Sikorski J, Ivanova N, Mavrommatis K, Lucas S et al.

    Standards in genomic sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Haloterrigena turkmenica type strain (4kT)

    Saunders E, Tindall B, Fähnrich R, Lapidus A, Copeland A, Del Rio T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Cellulomonas flavigena type strain (134).

    Abt B, Foster B, Lapidus A, Clum A, Sun H, Pukall R et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Meiothermus ruber type strain (21).

    Tindall B, Sikorski J, Lucas S, Goltsman E, Copeland A, Glavina Del Rio T et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1).

    Göker M, Held B, Lapidus A, Nolan M, Spring S, Yasawong M et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Geodermatophilus obscurus type strain (G-20T)

    Ivanova N, Sikorski J, Jando M, Munk C, Lapidus A, Glavina Del Rio T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Nakamurella multipartita type strain (Y-104T)

    Tice H, Mayilraj S, Sims D, Lapidus A, Nolan M, Lucas S et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Spirosoma linguale type strain (1T)

    Lail K, Sikorski J, Saunders E, Lapidus A, Glavina Del Rio T, Copeland A et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T)

    Clum A, Tindall B, Sikorski J, Ivanova N, Mavromatis K, Lucas S et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246).

    Copeland A, Sikorski J, Lapidus A, Nolan M, Glavina T, Del Rio et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1).

    Djao O, Zhang X, Lucas S, Lapidus A, Del Rio T, Nolan M et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Desulfarculus baarsii type strain (2st14).

    Sun H, Spring S, Lapidus A, Davenport K, Del Rio T, Tice H et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3).

    Pitluck S, Yasawong M, Held B, Lapidus A, Nolan M, Copeland A et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Methanothermus fervidus type strain (V24S).

    Anderson I, Djao O, Misra M, Chertkov O, Nolan M, Lucas S et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509).

    Sun H, Lapidus A, Nolan M, Lucas S, Del Rio T, Tice H et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Ferrimonas balearica type strain (PAT).

    Nolan M, Sikorski J, Davenport K, Lucas S, Del Rio T, Tice H et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).

    Sikorski J, Munk C, Lapidus A, Ngatchou Djao O, Lucas S, Glavina Del Rio T et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847).

    Brambilla E, Djao O, Daligault H, Lapidus A, Lucas S, Hammon N et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The Axis of Evol: Getting to the root of DNA repair with Philogeny

    Eisen J

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Primary Energy Metabolism in Geothermal Environments: The Role of Carbon Monoxide

    Robb F, Gonzalez J, Sokolova T, Chernyh N, Lebedinski A, Tallon L et al.

    Geothermal biology and geochemistry in Yellowstone National Park. (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • CompostBin: a DNA composition-based algorithm for binning environmental shotgun reads

    Chatterji S, Yamazaki I, Bai Z E

    RECOMB 2008: Proceedings of the 12th annual international conference on Research in computational molecular biology (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A New Biology for the 21st Century

    Connely T, Sharp P, Ausiello D, Bronner-Fraser M, Burke I, Burris J et al.

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Evolution

    Barton N, Briggs D, Eisen J, Goldstein D, Pastel N

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data

    Sharpton T, Riesenfeld S, Kembel S, Ladau J, O'Dwyer J, Green J et al.

    PLoS Computational Biology (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Archaeoglobus profundus type strain (AV18T)

    von Jan M, Lapidus A, Del Rio T, Copeland A, Tice H, Cheng J et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Candidatus Ruthia magnifica

    Roeselers G, Newton I, Woyke T, Auchtung T, Dilly G, Dutton R et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207).

    LaButti K, Mayilraj S, Clum A, Lucas S, Glavina Del Rio T, Nolan M et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1).

    Sikorski J, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Cheng J et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228T)

    Mavromatis K, Yasawong M, Chertkov O, Lapidus A, Lucas S, Nolan M et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Thermobaculum terrenum type strain (YNP1T)

    Kiss H, Cleland D, Lapidus A, Lucas S, Del Rio T, Nolan M et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Haliangium ochraceum type strain (SMP-2).

    Ivanova N, Daum C, Lang E, Abt B, Kopitz M, Saunders E et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Thermaerobacter marianensis type strain (7p75a).

    Han C, Gu W, Zhang X, Lapidus A, Nolan M, Copeland A et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Intrasporangium calvum type strain (7 KIP).

    Glavina Del Rio T, Chertkov O, Yasawong M, Lucas S, Deshpande S, Cheng J et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project

    Gilbert J, Meyer F, Antonopoulos D, Balaji P, Brown C, Desai N et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The Genome Sequence of Methanohalophilus mahii SLP Reveals Differences in the Energy Metabolism among Members of the Methanosarcinaceae Inhabiting Freshwater and Saline Environments.

    Spring S, Scheuner C, Lapidus A, Lucas S, Glavina Del Rio T, Tice H et al.

    Archaea (Vancouver, B.C.) (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39

    Read T, Brunham R, Shen C, Gill S, Heidelberg J, White O et al.

    Nucleic Acids Res (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • GENOMIC AND PHYSIOLOGICAL STUDIES ON EXTREMOPHILES : MODEL SYSTEMS FOR EXOBIOLOGY

    Diruggiero J, Nandakumar R, Eisen J, Schwartz M, Thomas R, Davila J et al.

    Solar Physics

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Classification: Biological Sciences / Microbiology Dissecting

    Lawrence E, Eisen J, Battista J, Peterson S

    New York

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Actinosynnema mirum type strain (101T)

    Land M, Lapidus A, Mayilraj S, Chen F, Copeland A, Glavina Del Rio T et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Sanguibacter keddieii type strain (ST-74).

    Ivanova N, Sikorski J, Sims D, Brettin T, Detter J, Han C et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Arcanobacterium haemolyticum type strain (11018T)

    Yasawong M, Teshima H, Lapidus A, Nolan M, Lucas S, Glavina Del Rio T et al.

    Standards in genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288).

    Sikorski J, Lapidus A, Chertkov O, Lucas S, Copeland A, Glavina Del Rio T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P).

    Pitluck S, Yasawong M, Munk C, Nolan M, Lapidus A, Lucas S et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Olsenella uli type strain (VPI D76D-27CT)

    Göker M, Held B, Lucas S, Nolan M, Yasawong M, Glavina Del Rio T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Vulcanisaeta distributa type strain (IC-017).

    Mavromatis K, Sikorski J, Pabst E, Teshima H, Lapidus A, Lucas S et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A science renga

    Aldston A, Borzekowski D, Eisen J, Fink S, Hoen E, Hung D et al.

    Nature (1998)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Lateral gene transfer or viral colonization?

    Salzberg S, Eisen J

    Science (New York, N.Y.) (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Flip-flop around the origin and terminus of replication in prokaryotic genomes

    Mackiewicz P, Mackiewicz D, Kowalczuk M, Cebrat S, Eisen J

    Genome Biology (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Halomicrobium mukohataei type strain (arg-2T)

    Tindall B, Schneider S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Kangiella koreensis type strain (SW-125T)

    Anderson I, Tindall B, Göker M, Lapidus A, Nolan M, Copeland A et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Dyadobacter fermentans type strain (NS114T)

    Lang E, Lapidus A, Chertkov O, Brettin T, Detter J, Han C et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883T)

    Chovatia M, Sikorski J, Schröder M, Lapidus A, Nolan M, Tice H et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Conexibacter woesei type strain (ID131577T)

    Pukall R, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng J et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1T)

    Pukall R, Lapidus A, Nolan M, Copeland A, {Glavina Del Rio} T, Lucas S et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300T)

    Harmon-Smith M, Celia L, Chertkov O, Lapidus A, Copeland A, Glavina Del Rio T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Meiothermus silvanus type strain (VI-R2T)

    Sikorski J, Tindall B, Lowry S, Lucas S, Nolan M, Copeland A et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Planctomyces limnophilus type strain (Mü 290T)

    Labutti K, Sikorski J, Schneider S, Nolan M, Lucas S, {Glavina Del Rio} T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IAT)

    Mavromatis K, Sikorski J, Lapidus A, {Glavina Del Rio} T, Copeland A, Tice H et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24T)

    Mavromatis K, Abt B, Brambilla E, Lapidus A, Copeland A, Deshpande S et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460T)

    Kiss H, Lang E, Lapidus A, Copeland A, Nolan M, {Glavina Del Rio} T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Brachyspira murdochii type strain (56-150T)

    Pati A, Sikorski J, Gronow S, Munk C, Lapidus A, Copeland A et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Desulfohalobium retbaense type strain (HR100T)

    Spring S, Nolan M, Lapidus A, Glavina Del Rio T, Copeland A, Tice H et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Segniliparus rotundus type strain (CDC 1076T)

    Sikorski J, Lapidus A, Copeland A, Misra M, Glavina Del Rio T, Nolan M et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Aminobacterium colombiense type strain (ALA-1T)

    Chertkov O, Sikorski J, Brambilla E, Lapidus A, Copeland A, Glavina Del Rio T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Streptosporangium roseum type strain (NI 9100T)

    Nolan M, Sikorski J, Jando M, Lucas S, Lapidus A, Glavina Del Rio T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Acidaminococcus fermentans type strain (VR4T)

    Chang Y, Pukall R, Saunders E, Lapidus A, Copeland A, Nolan M et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Gordonia bronchialis type strain (3410T)

    Ivanova N, Sikorski J, Jando M, Lapidus A, Nolan M, Lucas S et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Thermosphaera aggregans type strain (M11TLT)

    Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)

    Pati A, Gronow S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Veillonella parvula type strain (Te3T)

    Gronow S, Welnitz S, Lapidus A, Nolan M, Ivanova N, Glavina Del Rio T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Sulfurospirillum deleyianum type strain (5175T)

    Sikorski J, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Kribbella flavida type strain (IFO 14399T)

    Pukall R, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng J et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07T)

    Foster B, Pukall R, Abt B, Nolan M, Glavina Del Rio T, Chen F et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255T)

    Saunders E, Pukall R, Abt B, Lapidus A, {Glavina Del Rio} T, Copeland A et al.

    Standards in Genomic Sciences (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Sequenced strains must be saved from extinction

    Ward N, Eisen J, Fraser C, Stackebrandt E

    Nature (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugiamalayi

    Ware J, Moran L, Foster J, Posfai J, Vincze T, Guiliano D et al.

    Int J Parasitol (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes.

    Eisen J

    PLoS biology (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • PLoS Biology 2.0

    Eisen J

    PLoS Biology (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022T)

    Pati A, LaButti K, Pukall R, Nolan M, Glavina Del Rio T, Tice H et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Thermobispora bispora type strain (R51T)

    Liolios K, Sikorski J, Jando M, Lapidus A, Copeland A, Glavina T et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034).

    Glavina Del Rio T, Abt B, Spring S, Lapidus A, Nolan M, Tice H et al.

    Standards in genomic sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Thermocrinis albus type strain (HI 11/12T)

    Wirth R, Sikorski J, Brambilla E, Misra M, Lapidus A, Copeland A et al.

    Standards in Genomic Sciences (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

    Initiative A

    Nature (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon

    Hartman A, Norais C, Badger J, Delmas S, Haldenby S, Madupu R et al.

    PLoS ONE (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • BioTorrents: a file sharing service for scientific data.

    Langille M, Eisen J

    PLoS one (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Metagenomic Sequencing of an In Vitro-Simulated Microbial Community

    Morgan J, Darling A, Eisen J

    PLoS ONE (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes.

    Seshadri R, Myers G, Tettelin H, Eisen J, Heidelberg J, Dodson R et al.

    Proceedings of the National Academy of Sciences of the United States of America (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.

    Methe B, Nelson K, Eisen J, Paulsen I, Nelson W, Heidelberg J et al.

    Science (New York, N.Y.) (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.

    Methé B, Nelson K, Eisen J, Paulsen I, Nelson W, Heidelberg J et al.

    Science (New York, N.Y.) (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83

    Nelson K, Fleischmann R, DeBoy R, Paulsen I, Fouts D, Eisen J et al.

    J Bacteriol (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Comparative studies of resistin expression and phylogenomics in human and mouse.

    Yang R, Huang Q, Xu A, McLenithan J, Eisen J, Shuldiner A et al.

    Biochemical and biophysical research communications (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage.

    Miller E, Heidelberg J, Eisen J, Nelson W, Durkin A, Ciecko A et al.

    Journal of bacteriology (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Phylogenomics: intersection of evolution and genomics.

    Eisen J, Fraser C

    Science (New York, N.Y.) (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria.

    Read T, Peterson S, Tourasse N, Baillie L, Paulsen I, Nelson K et al.

    Nature (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis

    Paulsen I, Banerjei L, Myers G, Nelson K, Seshadri R, Read T et al.

    Science (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The age of the Arabidopsis thaliana genome duplication.

    Ermolaeva M, Wu M, Eisen J, Salzberg S

    Plant molecular biology (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the Q-fever pathogen Coxiella burnetii.

    Seshadri R, Paulsen I, Eisen J, Read T, Nelson K, Nelson W et al.

    Proceedings of the National Academy of Sciences of the United States of America (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis

    Heidelberg J, Paulsen I, Nelson K, Gaidos E, Nelson W, Read T et al.

    Nat Biotechnol (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts.

    Paulsen I, Seshadri R, Nelson K, Eisen J, Heidelberg J, Read T et al.

    Proceedings of the National Academy of Sciences of the United States of America (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the human malaria parasite Plasmodium falciparum

    Gardner M, Hall N, Fung E, White O, Berriman M, Hyman R et al.

    Nature (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The value of complete microbial genome sequencing (you get what you pay for).

    Fraser C, Eisen J, Nelson K, Paulsen I, Salzberg S

    Journal of bacteriology (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae.

    Tettelin H, Masignani V, Cieslewicz M, Eisen J, Peterson S, Wessels M et al.

    Proceedings of the National Academy of Sciences of the United States of America (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains

    Fleischmann R, Alland D, Eisen J, Carpenter L, White O, Peterson J et al.

    J Bacteriol (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium.

    Eisen J, Nelson K, Paulsen I, Heidelberg J, Wu M, Dodson R et al.

    Proceedings of the National Academy of Sciences of the United States of America (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Unsuspected diversity among marine aerobic anoxygenic phototrophs.

    Béjà O, Suzuki M, Heidelberg J, Nelson W, Preston C, Hamada T et al.

    Nature (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A cut above: discovery of an alternative excision repair pathway in bacteria.

    Van Houten B, Eisen J, Hanawalt P

    Proceedings of the National Academy of Sciences of the United States of America (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Brouhaha over the other yeast.

    Eisen J

    Nature (2002)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The genome of the natural genetic engineer Agrobacterium tumefaciens C58

    Wood D, Setubal J, Kaul R, Monks D, Kitajima J, Okura V et al.

    Science (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Microbial genes in the human genome: lateral transfer or gene loss?

    Salzberg S, White O, Peterson J, Eisen J

    Science (New York, N.Y.) (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Sequence and analysis of the Arabidopsis genome

    Bevan M, Mayer K, White O, Eisen J, Preuss D, Bureau T et al.

    Curr Opin Plant Biol (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Gastrogenomics.

    Eisen J

    Nature (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Microbial genome sequencing

    Fraser C, Eisen J, Salzberg S

    Nature (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Evidence for symmetric chromosomal inversions around the replication origin in bacteria

    Eisen J, Heidelberg J, White O, Salzberg S

    Genome Biology (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Horizontal gene transfer among microbial genomes: new insights from complete genome analysis

    Eisen J

    Curr Opin Genet Dev (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Assessing evolutionary relationships among microbes from whole-genome analysis

    Eisen J

    Curr Opin Microbiol (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

    Heidelberg J, Eisen J, Nelson W, Clayton R, Gwinn M, Dodson R et al.

    Nature (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Microbial genome sequencing 2000: new insights into physiology, evolution and expression analysis

    Nierman W, Eisen J, Fraser C

    Res Microbiol (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome data: what do we learn?

    Nierman W, Eisen J, Fleischmann R, Fraser C

    Curr Opin Struct Biol (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.

    Lin X, Kaul S, Rounsley S, Shea T, Benito M, Town C et al.

    Nature (1999)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima

    Nelson K, Clayton R, Gill S, Gwinn M, Dodson R, Haft D et al.

    Nature (1999)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.

    White O, Eisen J, Heidelberg J, Hickey E, Peterson J, Dodson R et al.

    Science (New York, N.Y.) (1999)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of Neisseria meningitidis serogroup B strain MC58

    Tettelin H, Saunders N, Heidelberg J, Jeffries A, Nelson K, Eisen J et al.

    Science (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • TIGRFAMs: a protein family resource for the functional identification of proteins.

    Haft D, Loftus B, Richardson D, Yang F, Eisen J, Paulsen I et al.

    Nucleic acids research (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A phylogenomic study of DNA repair genes, proteins, and processes.

    Eisen J, Hanawalt P

    Mutation research (1999)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Going to extremes. Archaea: bridging the gap between bacteria and eukarya (A Keystone Symposia), Taos, NM, USA, 9-14 January 1999.

    Eisen J

    Trends in genetics (1999)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • In silico-initiated cloning and molecular characterization of a novel human member of the L1 gene family of neural cell adhesion molecules.

    Wei M, Karavanova I, Ivanov S, Popescu N, Keck C, Pack S et al.

    Human genetics (1998)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A phylogenomic study of the MutS family of proteins

    Eisen J

    Nucleic acids research (1998)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based upon their RecA sequences

    Gruber T, Eisen J, Gish K, Bryant D

    FEMS Microbiol Lett (1998)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Second gene for gonadotropin-releasing hormone in humans

    White R, Eisen J, Kasten T, Fernald R

    Proceedings of the National Academy of Sciences (1998)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis.

    Eisen J

    Genome Research (1998)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Gastrogenomic delights: a movable feast.

    Eisen J, Kaiser D, Myers R

    Nature medicine (1997)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Sequence and drug susceptibility of subtype c reverse transcriptase from human immunodeficiency virus type 1 seroconverters in Zimbabwe

    Shafer R, Eisen J, Merigan T, Katzenstein D

    Journal Of Virology (1997)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The Genetic Data Environment. A user modifiable and expandable multiple sequence analysis package.

    Eisen J

    Methods in molecular biology (Clifton, N.J.) (1997)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species.

    Eisen J

    Journal of molecular evolution (1995)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions

    Eisen J, Sweder K, Hanawalt P

    Nucleic acids research (1995)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Sequence similarity of putative transposases links the maize Mutator autonomous element and a group of bacterial insertion sequences.

    Eisen J, Benito M, Walbot V

    Nucleic acids research (1994)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • recA mutations that reduce the constitutive coprotease activity of the RecA1202(Prtc) protein: possible involvement of interfilament association in proteolytic and recombination activities.

    Liu S, Eisen J, Hanawalt P, Tessman I

    Journal of bacteriology (1993)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Phylogenetic relationships of chemoautotrophic bacterial symbionts of Solemya velum say (Mollusca: Bivalvia) determined by 16S rRNA gene sequence analysis.

    Eisen J, Smith S, Cavanaugh C

    Journal of bacteriology (1992)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Environmental genome shotgun sequencing of the Sargasso Sea.

    Venter J, Remington K, Heidelberg J, Halpern A, Rusch D, Eisen J et al.

    Science (New York, N.Y.) (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • New evolutionary frontiers from unusual virus genomes.

    Desjardins C, Eisen J, Nene V

    Genome biology (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes.

    Seshadri R, Adrian L, Fouts D, Eisen J, Phillippy A, Methe B et al.

    Science (New York, N.Y.) (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.

    Moran M, Buchan A, González J, Heidelberg J, Whitman W, Kiene R et al.

    Nature (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon.

    Dassarma S, Kennedy S, Berquist B, Victor Ng W, Baliga N, Spudich J et al.

    Photosynthesis research (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts.

    Penn K, Wu D, Eisen J, Ward N

    Applied and environmental microbiology (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901

    Wu M, Ren Q, Durkin A, Daugherty S, Brinkac L, Dodson R et al.

    PLoS Genetics (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters

    Wu D, Daugherty S, Van Aken S, Pai G, Watkins K, Khouri H et al.

    PLoS Biology (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)

    Leebens-Mack J, Vision T, Brenner E, Bowers J, Cannon S, Clement M et al.

    Omics a journal of integrative biology (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

    Eisen J, Coyne R, Wu M, Wu D, Thiagarajan M, Wortman J et al.

    PLoS Biol (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.

    Rusch D, Halpern A, Sutton G, Heidelberg K, Williamson S, Yooseph S et al.

    PLoS biology (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Identification of a fourth family of lycopene cyclases in photosynthetic bacteria.

    Maresca J, Graham J, Wu M, Eisen J, Bryant D

    Proceedings of the National Academy of Sciences of the United States of America (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans

    Podar M, Anderson I, Makarova K, Elkins J, Ivanova N, Wall M et al.

    Genome Biology (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • On the taxonomic status of the intracellular bacterium Wolbachia pipientis: should this species name include the intracellular bacteria of filarial nematodes?

    Pfarr K, Foster J, Slatko B, Hoerauf A, Eisen J

    International journal of systematic and evolutionary microbiology (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum

    Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham J et al.

    PLoS ONE (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).

    Yang J, Madupu R, Durkin S, Ekborg N, Pedamallu C, Hostetler J et al.

    PloS one (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Human gut microbiome adopts an alternative state following small bowel transplantation.

    Hartman A, Lough D, Barupal D, Fiehn O, Fishbein T, Zasloff M et al.

    Proceedings of the National Academy of Sciences of the United States of America (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

    Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova N et al.

    Nature (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Coordinating Efforts to Understand Microbes in the Environment

    Eisen J

    Asm News (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genetic and physical mapping of DNA replication origins in Haloferax volcanii

    Norais C, Hawkins M, Hartman A, Eisen J, Myllykallio H, Allers T

    PLoS Genet (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The Calyptogena magnifica chemoautotrophic symbiont genome.

    Newton I, Woyke T, Auchtung T, Dilly G, Dutton R, Fisher M et al.

    Science (New York, N.Y.) (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Evolution of sensory complexity recorded in a myxobacterial genome.

    Goldman B, Nierman W, Kaiser D, Slater S, Durkin A, Eisen J et al.

    Proceedings of the National Academy of Sciences of the United States of America (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Comparative genomics of emerging human ehrlichiosis agents.

    Hotopp J, Lin M, Madupu R, Crabtree J, Angiuoli S, Eisen J et al.

    PLoS genetics (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales.

    Badger J, Eisen J, Ward N

    International journal of systematic and evolutionary microbiology (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Gene synteny and evolution of genome architecture in trypanosomatids.

    Ghedin E, Bringaud F, Peterson J, Myler P, Berriman M, Ivens A et al.

    Molecular and biochemical parasitology (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance.

    Tanaka M, Earl A, Howell H, Park M, Eisen J, Peterson S et al.

    Genetics (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.

    Heidelberg J, Seshadri R, Haveman S, Hemme C, Paulsen I, Kolonay J et al.

    Nature biotechnology (2004)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Deep Submergence Synergy:

    Shank T, Fornari D, Yoerger D, Humphris S, Bradley A, Hammond S et al.

    EOS (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Microbial and Plant Genomics

    Eisen J

    J. Biolaw Biobusiness (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Comparative Genomics and Understanding of Microbial Biology

    Fraser C, Eisen J, Fleischmann R, Ketchum K, Peterson S

    Emerging Infectious Diseases (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Complete Genome Sequence of

    Jeffries A, Nelson K, Eisen J, Ketchum K, Hood D, Peden J et al.

    Science (2000)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Mechanistic basis for microsatellite instability

    Eisen J

    Microsatellites—evolution and applications (1999)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Evolution of DNA repair genes, proteins and processes

    Eisen J

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genomic evolvability and the origin of novelty: studying the past, interpreting the present, and predicting the future

    Eisen J

    Microbial Evolution and Co-Adaptation: A Tribute to the Life and Scientific Legacies of Joshua Lederberg (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola.

    Campbell B, Smith J, Hanson T, Klotz M, Stein L, Lee C et al.

    PLoS genetics (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.

    Valdés J, Pedroso I, Quatrini R, Dodson R, Tettelin H, Blake R et al.

    BMC genomics (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure

    Coyne R, Thiagarajan M, Jones K, Wortman J, Tallon L, Haas B et al.

    BMC Genomics (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A simple, fast, and accurate method of phylogenomic inference

    Wu M, Eisen J

    Genome biology (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • An automated phylogenetic tree-based Small subunit rRNA Taxonomy and Alignment Pipeline (STAP)

    Wu D, Hartman A, Ward N, Eisen J

    PLoS ONE (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • PLoS ONE: Assembling the Marine Metagenome, One Cell at a Time

    Woyke T, Xie G, Copeland A, González J, Han C, Kiss H et al.

    PLoS ONE (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Adjunct Scientist

DOE Joint Genome Institute

May 2006 - Present

Professor

University of California, Davis

May 2006 - Present

Adjunct Faculty

The Johns Hopkins University

September 2000 - September 2009 (9 years)

Investigator

The Institute for Genomic Research

December 1998 - May 2006 (7 years 5 months)

Field Assistant

Rocky Mountain Biological Laboratory

June 1991 - September 1991 (3 months)

Field Assistant

Rocky Mountain Biological Laboratory

June 1988 - September 1988 (3 months)

Intern Investigator

Public Defender Service of the District of Columbia

June 1987 - September 1987 (3 months)

Education history

Stanford University

Ph.D., Biological Sciences

September 1991 - November 1998 (7 years 2 months)

Harvard College

A.B., Biology

September 1986 - June 1990 (3 years 9 months)