Paula Mabee

  • Ph.D.
  • Professor
  • Professor
  • University of South Dakota
  • Agricultural and Biological Sciences

Research Interests

Evolution and development of fishes; informatics approaches to computing on phenotypes

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Publications

500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

Mabee P, Balhoff J, Dahdul W, Lapp H, Midford P, Vision T, et al.

Journal of Applied Ichthyology (2012)

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A Unified Anatomy Ontology of the Vertebrate Skeletal System

Dahdul W, Balhoff J, Blackburn D, Diehl A, Haendel M, Hall B, et al.

PLoS ONE (2012)

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Development of the mandibular, hyoid, and branchial arch skeleton in Puntius semifasciolatus: Comparisons of ossification sequences among Cypriniformes

Block A, Mabee P

Journal of Fish Biology (2012)

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Gill-arch musculature of the quillback Carpiodes cyprinus (Cypriniformes: Catostomidae) with a comparison to cyprinids.

Grey E, Mabee P

Journal of morphology (2012)

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Phenotype Ontology Research Coordination Network meeting report: creating a community network for comparing and leveraging phenotype-genotype knowledge across species

Mabee P, Deans A, Huala E, Lewis S

Standards in Genomic Sciences (2012)

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Segmentation and fusion on the midline: basibranchial homologies in cypriniform fishes

Engeman J, Mabee P

Journal of Morphology (2012)

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Development of Non-Teleost Fishes

Mabee P

Quarterly Review of Biology (2011)

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Gill arch and hyoid arch diversity and cypriniform phylogeny: Distributed integration of morphology and web-based tools

Mabee P, Grey E, Arratia G

Zootaxa (2011)

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A Multifaceted View of Evo-Devo Forms of Becoming: The Evolutionary Biology of Development. Alessandro Minelli. Princeton University Press. 2009. 242 pp., illus. $27.95 (ISBN 9780691135687 cloth).

Mabee P

BioScience (2010)

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Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

Dahdul W, Balhoff J, Engeman J, Grande T, Hilton E, Kothari C, et al.

PLoS ONE (2010)

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Phenex: Ontological Annotation of Phenotypic Diversity

Balhoff J, Dahdul W, Kothari C, Lapp H, Lundberg J, Mabee P, et al.

PLoS ONE (2010)

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The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age

Dahdul W, Lundberg J, Midford P, Balhoff J, Lapp H, Vision T, et al.

Systematic Biology (2010)

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Development of the pharyngeal arch skeleton in Catostomus commersonii (Teleostei: Cypriniformes)

Engeman J, Aspinwall N, Mabee P

Journal of Morphology (2009)

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CARO–the common anatomy reference ontology

Haendel M, Neuhaus F, Osumi-Sutherland D, Mabee P, Mejino J, Mungall C, et al.

Anatomy Ontologies for Bioinformatics: Principles and Practice (2008)

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Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish.

Mabee P, Arratia G, Coburn M, Haendel M, Hilton E, Lundberg J, et al.

Journal of experimental zoology. Part B, Molecular and developmental evolution (2007)

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Early developmental plasticity and integrative responses in arctic charr (Salvelinus alpinus): effects of water velocity on body size and shape.

Grünbaum T, Cloutier R, Mabee P, Le François N

Journal of experimental zoology. Part B, Molecular and developmental evolution (2007)

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Gene expression patterns underlying proximal-distal skeletal segmentation in late-stage zebrafish, Danio rerio.

Crotwell P, Mabee P

Developmental dynamics : an official publication of the American Association of Anatomists (2007)

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Development of the paired fins in the paddlefish, Polyodon spathula

Mabee P, Noordsy M

Journal of Morphology (2004)

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Expression of bmp2a and bmp2b in late-stage zebrafish median fin development

Crotwell P, Sommervold A, Mabee P

Gene Expression Patterns (2004)

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Skeletogenesis in zebrafish Danio rerio: evolutionary and developmental aspects.

Fisher S, Mabee P, Zhiyuan G, Korzh V

Fish development and genetics: the zebrafish and medaka models (2004)

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Developmental morphology of the axial skeleton of the zebrafish, Danio rerio (Ostariophysi: Cyprinidae).

Bird N, Mabee P

Developmental Dynamics (2003)

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Evolution of median fin modules in the axial skeleton of fishes.

Mabee P, Crotwell P, Bird N, Burke A

The Journal of Experimental Zoology (2002)

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Founding editorial: embryology--an integrated approach.

Richardson M, Keynes R, Mabee P, Selwood L

TheScientificWorldJournal (2001)

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Gdf5 is expressed in the developing skeleton of median fins of late-stage zebrafish, Danio rerio

Crotwell P, Clark T, Mabee P

Development, Genes and Evolution (2001)

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An experimental study of intraspecific variation, developmental timing and heterochrony in fishes

Mabee P, Olmstead K, Cubbage C

Evolution (2000)

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The usefulness of ontogeny in interpreting morphological characters

Mabee P

Phylogenetic Analysis of Morphological Data (2000)

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Effect of clearing and staining on fish length

Mabee P, Aldridge E, Warren E, Helenurm K

Copeia (1998)

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Morphology of the hatching glands in Betta splendens (Teleostei: Perciformes)

Mabee P, Cua D, Barlow S, Helvik J

Copeia (1998)

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Development of the cranium and paired fins in Betta splendens (Teleostei: Percomorpha): Intraspecific variation and interspecific comparisons

Mabee P, Trendler T

Journal of Morphology (1996)

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Development of the cranium and paired fins in the zebrafish Danio rerio (Ostariophysi, Cyprinidae)

Cubbage C, Mabee P

Journal of Morphology (1996)

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Forum: Reassessing the Ontogenetic Criterion: a Response To Patterson

Mabee P

Cladistics (1996)

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Evolution of pigment pattern development in centrarchid fishes

Mabee P

Copeia (1995)

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A dual embryonic origin for vertebrate mechanoreceptors

Collazo A, Fraser S, Mabee P

Science (1994)

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Coding polymorphic data: Examples from allozymes and ontogeny

Mabee P, Humphries J

Systematic Biology (1993)

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Phylogenetic interpretation of ontogenetic change: sorting out the actual and artefactual in an empirical case study of centrarchid fishes

Mabee P

Zoological Journal of the Linnean Society (1993)

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Development and evolution - the emergence of a new field

Wake D, Mabee P, Hanken J, Wagner G

Proceedings of the Fourth International Congress of Systematic and Evolutionary Biology, ICSEB IV (1991)

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An empirical rejection of the ontogenetic polarity criterion

Mabee P

Cladistics (1989)

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Assumptions underlying the use of ontogenetic sequences for determining character state order

Mabee P

Transactions of the American Fisheries Society (1989)

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Supraneural and predorsal bones in fishes: development and homologies

Mabee P

Copeia (1988)

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Professional experience

Professor

University of South Dakota

August 1997 - Present