Robert Kofler Dr.

Senior PostDoc

VetMedUni Vienna

Location
Vienna, Austria
Discipline
Biological Sciences
Interests
Genome evolution NGS data analysis Transposable elements Genome architecture Bioinformatics
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  • 12 Followers

Publications

  • Massive bursts of transposable element activity in Drosophila

    Kofler R, Nolte V, Schlotterer C

    bioRxiv (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A Guide for the Design of Evolve and Resequencing Studies.

    Kofler R, Schlötterer C

    Molecular biology and evolution (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor

    Llorens F, Hummel M, Pantano L, Pastor X, Vivancos A, Castillo E et al.

    BMC Genomics (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples

    Boitard S, Kofler R, Françoise P, Robelin D, Schlötterer C, Futschik A

    Molecular Ecology Resources (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana

    Nolte V, Pandey R, Kofler R, Schlotterer C

    Genome Research (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America

    Fabian D, Kapun M, Nolte V, Kofler R, Schmidt P, Schlötterer C et al.

    Molecular Ecology (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles.

    Orozco-Terwengel P, Kapun M, Nolte V, Kofler R, Flatt T, Schlötterer C

    Molecular ecology (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof.

    Esteve-Codina A, Kofler R, Himmelbauer H, Ferretti L, Vivancos A, Groenen M et al.

    Heredity (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Microsatellites for the genus Cucurbita and an SSR-based genetic linkage map of Cucurbita pepo L.

    Gong L, Stift G, Kofler R, Pachner M, Lelley T

    TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • SciRoKo: a new tool for whole genome microsatellite search and investigation.

    Kofler R, Schlötterer C, Lelley T

    Bioinformatics (Oxford, England) (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1.

    Kofler R, Bartos J, Gong L, Stift G, Suchánková P, Simková H et al.

    TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.

    Bartos J, Paux E, Kofler R, Havránková M, Kopecký D, Suchánková P et al.

    BMC plant biology (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites.

    Kofler R, Schlötterer C, Luschützky E, Lelley T

    BMC genomics (2008)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • PanGEA: identification of allele specific gene expression using the 454 technology.

    Kofler R, Teixeira Torres T, Lelley T, Schlötterer C

    BMC bioinformatics (2009)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals.

    Kofler R, Orozco-terWengel P, De Maio N, Pandey R, Nolte V, Futschik A et al.

    PloS one (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • PoPoolation DB: a user-friendly web-based database for the retrieval of natural polymorphisms in Drosophila.

    Pandey R, Kofler R, Orozco-terWengel P, Nolte V, Schlötterer C

    BMC genetics (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis.

    Llorens F, Hummel M, Pastor X, Ferrer A, Pluvinet R, Vivancos A et al.

    BMC genomics (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq).

    Kofler R, Pandey R, Schlötterer C

    Bioinformatics (Oxford, England) (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Exploring the gonad transcriptome of two extreme male pigs with RNA-seq.

    Esteve-Codina A, Kofler R, Palmieri N, Bussotti G, Notredame C, Pérez-Enciso M

    BMC genomics (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster.

    Kofler R, Betancourt A, Schlötterer C

    PLoS genetics (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Gowinda: unbiased analysis of gene set enrichment for Genome Wide Association Studies.

    Kofler R, Schlötterer C

    Bioinformatics (Oxford, England) (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Senior PostDoc

VetMedUni Vienna

January 2011 - Present

PostDoc

VetMedUni Vienna

August 2009 - December 2010 (1 year 4 months)

PostDoc

Centre for Genomic Regulation (CRG)

August 2008 - August 2009 (1 year)

Education history

BOKU - University of Natural Resources and Life Sciences, Vienna

PhD - Genetics

September 2005 - July 2008 (2 years 10 months)

BOKU - University of Natural Resources and Life Sciences, Vienna

M.Sc

October 1999 - February 2005 (5 years 4 months)