Robert Kofler

  • Dr.
  • Researcher
  • Senior PostDoc
  • VetMedUni Vienna
  • Agricultural and Biological Sciences

Research Interests

Genome evolution NGS data analysis Transposable elements Genome architecture Bioinformatics

Followers (13)

  • Michael Fontaine

    Michael Fontaine

  • Marco Fracassetti

    Marco Fracassetti Université de Neuchâtel

  • Tom Hill

    Tom Hill University of Veterinary Medicine Vienna

  • ray tobler

    ray tobler University of Adelaide

  • Christopher Thurnher

    Christopher Thurnher University of Natural Resources and Life Sciences

Explore network

Following (14)

  • Tom Hill

    Tom Hill University of Veterinary Medicine Vienna

  • ray tobler

    ray tobler University of Adelaide

  • Christopher Thurnher

    Christopher Thurnher University of Natural Resources and Life Sciences

  • Mads Fristrup Schou

    Mads Fristrup Schou

  • Andrea Betancourt

    Andrea Betancourt

Explore network

Publications

Massive bursts of transposable element activity in Drosophila

Kofler R, Nolte V, Schlotterer C

bioRxiv (2014)

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A Guide for the Design of Evolve and Resequencing Studies.

Kofler R, Schlötterer C

Molecular biology and evolution (2013)

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Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor

Llorens F, Hummel M, Pantano L, Pastor X, Vivancos A, Castillo E, et al.

BMC Genomics (2013)

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Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples

Boitard S, Kofler R, Françoise P, Robelin D, Schlötterer C, Futschik A

Molecular Ecology Resources (2013)

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Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles.

Orozco-Terwengel P, Kapun M, Nolte V, Kofler R, Flatt T, Schlötterer C

Molecular ecology (2012)

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Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America

Fabian D, Kapun M, Nolte V, Kofler R, Schmidt P, Schlötterer C, et al.

Molecular Ecology (2012)

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Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana

Nolte V, Pandey R, Kofler R, Schlotterer C

Genome Research (2012)

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Gowinda: unbiased analysis of gene set enrichment for Genome Wide Association Studies.

Kofler R, Schlötterer C

Bioinformatics (Oxford, England) (2012)

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Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster.

Kofler R, Betancourt A, Schlötterer C

PLoS genetics (2012)

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Exploring the gonad transcriptome of two extreme male pigs with RNA-seq.

Esteve-Codina A, Kofler R, Palmieri N, Bussotti G, Notredame C, Pérez-Enciso M

BMC genomics (2011)

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Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis.

Llorens F, Hummel M, Pastor X, Ferrer A, Pluvinet R, Vivancos A, et al.

BMC genomics (2011)

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Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof.

Esteve-Codina A, Kofler R, Himmelbauer H, Ferretti L, Vivancos A, Groenen M, et al.

Heredity (2011)

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PoPoolation DB: a user-friendly web-based database for the retrieval of natural polymorphisms in Drosophila.

Pandey R, Kofler R, Orozco-terWengel P, Nolte V, Schlötterer C

BMC genetics (2011)

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PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq).

Kofler R, Pandey R, Schlötterer C

Bioinformatics (Oxford, England) (2011)

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PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals.

Kofler R, Orozco-terWengel P, De Maio N, Pandey R, Nolte V, Futschik A, et al.

PloS one (2011)

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PanGEA: identification of allele specific gene expression using the 454 technology.

Kofler R, Teixeira Torres T, Lelley T, Schlötterer C

BMC bioinformatics (2009)

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A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.

Bartos J, Paux E, Kofler R, Havránková M, Kopecký D, Suchánková P, et al.

BMC plant biology (2008)

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Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1.

Kofler R, Bartos J, Gong L, Stift G, Suchánková P, Simková H, et al.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik (2008)

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Microsatellites for the genus Cucurbita and an SSR-based genetic linkage map of Cucurbita pepo L.

Gong L, Stift G, Kofler R, Pachner M, Lelley T

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik (2008)

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Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites.

Kofler R, Schlötterer C, Luschützky E, Lelley T

BMC genomics (2008)

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SciRoKo: a new tool for whole genome microsatellite search and investigation.

Kofler R, Schlötterer C, Lelley T

Bioinformatics (Oxford, England) (2007)

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Professional experience

Senior PostDoc

VetMedUni Vienna

January 2011 - Present

PostDoc

VetMedUni Vienna

August 2009 - December 2010 (1 year 4 months)

PostDoc

Centre for Genomic Regulation (CRG)

August 2008 - August 2009 (1 year)

Education history

BOKU - University of Natural Resources and Life Sciences, Vienna

PhD - Genetics

September 2005 - July 2008 (2 years 10 months)

BOKU - University of Natural Resources and Life Sciences, Vienna

M.Sc

October 1999 - February 2005 (5 years 4 months)