Roberto Vera Physic Degree

Research Fellow

Laboratorio Nazionale del Consorzio Interuniversitario per le Biotecnologie

City
Trieste, Italy
Discipline
Biological Sciences
Interests
University Professor with advanced programming skills applied to Bioinformatics Research Projects with software developing needs. Research specialist with a bast experience which cover since the design and developing of complex computer infrastructure usi
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About

University Professor with advanced programming skills applied to Bioinformatics Research Projects with software developing needs. Research specialist with a bast experience which cover since the design and developing of complex computer infrastructure using GNU/Linux as Operating System for high performance computing to software design and developing for Bioinformatics. Professional with several years of experience in international and domestic laboratory environments. Remarkable teacher teaching physics for engineers.

Actually interested in biological database integration and knowledge generation using data mining algorithms.

Specialties:
- Advancing Linux Operating Systems Administration: Design, implementation and administration of a Beowulf computer cluster.
- Linux OS advancing programming and configuration.
- C, C++, Java, PHP, Perl, Bash scripting, SQL advancing programming applied to Bioinformnatics Research Projects.
- Virtual Screening strategies design and validation applied to several research projects.
- Design and implementation of a relational database system to integrate biological data sources.
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Publications

  • Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification.

    Pongor L, Vera R, Ligeti B

    PloS one (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • ComQXPA Quorum Sensing Systems May Not Be Unique to Bacillus subtilis: A Census in Prokaryotic Genomes.

    Dogsa I, Choudhary K, Marsetic Z, Hudaiberdiev S, Vera R, Pongor S et al.

    PloS one (2014)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Predicting effective drug combinations via network propagation

    Ligeti B, Vera R, Lukacs G, Gyorffy B, Pongor S

    2013 IEEE Biomedical Circuits and Systems Conference (BioCAS) (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Antineoplastic compounds and pharmaceutical compositions thereof

    Rodriguez Fernandez R, Vera Alvarez R, de la Nuez Veulens A, Mazola Reyes Y, Perea Rodriguez S, Acevedo Castro B et al.

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Chemical compounds having antiviral activity against dengue virus and other flaviviruses

    Mazola Reyes Y, Chinea Santiago G, Guirola Cruz O, Vera Alvarez R, Huerta Galindo V, Fleitas Salazar N et al.

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra.

    Kertész-Farkas A, Reiz B, Vera R, Myers M, Pongor S

    Bioinformatics (Oxford, England) (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A parallel systematic-Monte Carlo algorithm for exploring conformational space.

    Perez-Riverol Y, Vera R, Mazola Y, Musacchio A

    Current topics in medicinal chemistry (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Evaluation of Phenylthiocarbamoyl-Derivatized Peptides by Electrospray Ionization Mass Spectrometry: Selective Isolation and Analysis of Modified Multiply Charged Peptides for Liquid Chromatography-Tandem Mass Spectrometry Experiments.

    Sanchez A, Perez-Riverol Y, González L, Noda J, Betancourt L, Ramos Y et al.

    Analytical chemistry (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • In silico analysis of accurate proteomics, complemented by selective isolation of peptides.

    Perez-Riverol Y, Sánchez A, Ramos Y, Schmidt A, Müller M, Betancourt L et al.

    Journal of proteomics (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • JBioWH: an open-source Java framework for bioinformatics data integration.

    Vera R, Perez-Riverol Y, Perez S, Ligeti B, Kertesz-Farkas A, Pongor S et al.

    Database : the journal of biological databases and curation (2013)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Research Fellow

Laboratorio Nazionale del Consorzio Interuniversitario per le Biotecnologie

December 2012 - Present

Research Fellow

International Centre from Genetic Engineering and Biotechnology

June 2012 - December 2012 (6 months)

Assistant Professor

Polytechnic University Jose A. Echeverria (ISPJAE)

December 2010 - December 2012 (2 years)

Bioinformatics Researcher

Center for Genetic Engineering and Biotechnology (CIGB)

September 2003 - September 2010 (7 years)

Education history

University of Havana

Physic Degree, Physics

September 1997 - July 2003 (5 years 10 months)