Rutger Vos

  • PhD
  • Computational Biologist
  • Naturalis National Museum of Natural History
28

Publications

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Readers

9

h-index

1403

Citations

Research Interests

phyloinformatics phylogenomics interoperability data standards software engineering bioinformatics computational biology

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About

I am a computational biologist at Naturalis Biodiversity Center, a contributor to various open source software projects and I keep myself busy thinking about computational biology, phylogenetics and evolution.

Publications

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Katayama T, Wilkinson M, Aoki-Kinoshita K, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim J, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal R, Buttigieg P, Campbell M, Chen Y, Chiba H, Cock P, Cohen K, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kalaš M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, Lütteke T, Marshall M, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer N, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin S, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel P, Yamada I, Yamasaki C, Yamashita R, York W, Zmasek C, Kawamoto S, Takagi T

Journal of biomedical semantics (2014)

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Enriched biodiversity data as a resource and service.

Vos R, Biserkov J, Balech B, Beard N, Blissett M, Brenninkmeijer C, van Dooren T, Eades D, Gosline G, Groom Q, Hamann T, Hettling H, Hoehndorf R, Holleman A, Hovenkamp P, Kelbert P, King D, Kirkup D, Lammers Y, DeMeulemeester T, Mietchen D, Miller J, Mounce R, Nicolson N, Page R, Pawlik A, Pereira S, Penev L, Richards K, Sautter G, Shorthouse D, Tähtinen M, Weiland C, Williams A, Sierra S

Biodiversity data journal (2014)

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Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek C, Vaidya G, Pontelli E, Cranston K, Vos R, Webb C, Harmon L, Pirrung M, O'Meara B, Pennell M, Mirarab S, Rosenberg M, Balhoff J, Bik H, Heath T, Midford P, Brown J, McTavish E, Sukumaran J, Westneat M, Alfaro M, Steele A, Jordan G

BMC bioinformatics (2013)

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SUPERSMART: Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages and Relationships of Taxa

Antonelli A, Töpel M, Vos R, Nilsson K, Nylander J, Oxelman B, Sjökvist E, Nilsson H, Silvestro D, Sanderson M

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The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.

Katayama T, Wilkinson M, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Chun H, Aerts J, Afzal H, Antezana E, Arakawa K, Aranda B, Belleau F, Bolleman J, Bonnal R, Chapman B, Cock P, Eriksson T, Gordon P, Goto N, Hayashi K, Horn H, Ishiwata R, Kaminuma E, Kasprzyk A, Kawaji H, Kido N, Kim Y, Kinjo A, Konishi F, Kwon K, Labarga A, Lamprecht A, Lin Y, Lindenbaum P, McCarthy L, Morita H, Murakami K, Nagao K, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Ono K, Oshita K, Park K, Prins P, Saito T, Samwald M, Satagopam V, Shigemoto Y, Smith R, Splendiani A, Sugawara H, Taylor J, Vos R, Withers D, Yamasaki C, Zmasek C, Kawamoto S, Okubo K, Asai K, Takagi T

Journal of biomedical semantics (2013)

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Professional experience

Computational Biologist

Naturalis National Museum of Natural History

February 2012 - Present

Education history

Simon Fraser University Department of Biological Sciences

PhD

January 2001 - May 2006 (5 years 4 months)

Biology, University of Amsterdam

MSc

December 1994 - June 2000 (5 years 6 months)