Rutger Vos PhD

Computational Biologist

Naturalis

Location
Leiden, Netherlands
Discipline
Biological Sciences
Interests
phyloinformatics, phylogenomics, interoperability, data standards, software engineering, bioinformatics, computational biology
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  • 80 Followers

About

I am a computational biologist at Naturalis Biodiversity Center, a contributor to various open source software projects and I keep myself busy thinking about computational biology, phylogenetics and evolution.
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Publications

  • SUPERSMART: Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages and Relationships of Taxa

    Antonelli A, Töpel M, Vos R, Nilsson K, Nylander J, Oxelman B et al.

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Inferring Large Phylogenies: The Big Tree Problem

    Vos R

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • NeXML: rich, extensible, and verifiable representation of comparative data and metadata

    Vos R, Balhoff J, Caravas J, Holder M, Lapp H, Maddison W et al.

    Systematic Biology (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Biogem: an effective tool based approach for scaling up open source software development in bioinformatics

    Bonnal R, Aerts J, Githinji G, Goto N, MacLean D, Miller C et al.

    Bioinformatics (2012)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • BIO::Phylo-phyloinformatic analysis using perl.

    Vos R, Caravas J, Hartmann K, Jensen M, Miller C

    BMC bioinformatics (2011)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • EvoIO: Community-driven standards for sustainable interoperability

    Stoltzfus A, Cranston K, Lapp H, McKay S, Pontelli E, Vos R et al.

    Nature Precedings

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • TreeBASE2: Rise of the Machines

    Vos R, Lapp H, Piel W, Tannen V

    Nature Precedings (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.

    Katayama T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita K, Yamamoto Y et al.

    Journal of biomedical semantics (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Evolution of embryonic developmental period in the marine bird families Alcidae and Spheniscidae: roles for nutrition and predation?

    Hipfner J, Gorman K, Vos R, Joy J

    BMC Evolutionary Biology (2010)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Evolutionary Data Leaping to Web 3.0: Some Highlights From NESCent's Third Hackathon

    Lapp H, Stoltzfus A, Vision T, Vos R

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • TreeBASE v. 2: A Database of Phylogenetic Knowledge

    Piel W, Chan L, Dominus M, Ruan J, Vos R, Tannen V

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Data standards in phylogenetics: the NeXML project

    Vos R

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The 2006 NESCent Phyloinformatics Hackathon: A Field Report

    Lapp H, Bala S, Balhoff J, Bouck A, Goto N, Holder M et al.

    Evolutionary Bioinformatics (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Supertree for the Geomyoids (Mammalia: Rodentia, Geomyoidea)

    Wong D, Vos R, Mooers A

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • A Dated MRP Supertree for the Order Primates

    Vos R, Mooers A

    Systematic Biology

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Bio::CDAT - An Object for Evolutionary Analysis of Data

    Stoltzfus A, Vos R, Reese J, Qiu W

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The Shapes of Phylogenies

    Mooers A, Vos R

    Mathematics of Evolution and Phylogeny (2005)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Hybridization without guilt: gene flow and the biological species concept

    Rundle H, Breden F, Griswold C, Mooers A, Vos R, Whitton J

    Journal of Evolutionary Biology (2001)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Accelerated likelihood surface exploration: the likelihood ratchet.

    Vos R

    Systematic Biology (2003)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Reconstructing divergence times for supertrees: a molecular approach.

    Vos R, Mooers A

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Western flower thrips (Thysanoptera: Thripidae) preference for thrips-damaged leaves over fresh leaves enables uptake of symbiotic gut bacteria

    de Vries E, Vos R, Jacobs G, Breeuwer H

    European Journal of Entomology (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • Estimating the relative order of speciation or coalescence events on a given phylogeny

    Gernhard T, Ford D, Vos R, Steel M

    Evolutionary Bioinformatics Online (2006)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.
  • The delayed rise of present-day mammals

    Bininda-Emonds O, Cardillo M, Jones K, MacPhee R, Beck R, Grenyer R et al.

    Nature (2007)

    • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Computational Biologist

Naturalis

February 2012 - Present

Education history

Department of Biological Sciences, Simon Fraser University

PhD

January 2001 - May 2006 (5 years 4 months)

Biology, University of Amsterdam

MSc

December 1994 - June 2000 (5 years 6 months)