Todd Vision

  • Professor > Associate Professor
  • Associate Professor
  • University of North Carolina at Chapel Hill Department of Biology
  • Agricultural and Biological Sciences

Research Interests

The evolution of genomes and phenotypes and applications of computers to studying them. ORCID:0000-0002-6133-2581

Followers (46)

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Following (41)

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Publications

Linking Evolution, Ecology, and Health: TriCEM

Nunn C, Alberts S, McClain C, Meshnick S, Vision T, Wiegmann B, et al.

BioScience (2015)

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ODIN: The ORCID and DataCite interoperability network

Fenner M, Haak L, Thorisson G, Ruiz S, Vision T, Brase J

International Journal of Knowledge and Learning (2015)

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Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution

Manda P, Balhoff J, Lapp H, Mabee P, Vision T

Genesis (2015)

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Annotation of phenotypic diversity: Decoupling data curation and ontology curation using Phenex

Balhoff J, Dahdul W, Dececchi T, Lapp H, Mabee P, Vision T

Journal of Biomedical Semantics (2014)

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The standing pool of genomic structural variation in a natural population of Mimulus guttatus

Flagel L, Willis J, Vision T

Genome Biology and Evolution (2014)

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A grassroots approach to software sustainability

Cranston K, Vision T, O'Meara B, Lapp H

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Data reuse and the open data citation advantage

Piwowar H, Vision T

PeerJ (2013)

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Science Incubators: Synthesis Centers and Their Role in the Research Ecosystem

Rodrigo A, Alberts S, Cranston K, Kingsolver J, Lapp H, McClain C, et al.

PLoS Biology (2013)

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500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

Mabee P, Balhoff J, Dahdul W, Lapp H, Midford P, Vision T, et al.

Journal of Applied Ichthyology (2012)

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Minimizing the number of episodes and Gallai's theorem on intervals

Czabarka E, Székely L, Vision T

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Beginning to track 1000 datasets from public repositories into the published literature

Piwowar H, Carlson J, Vision T

Proceedings of the ASIST Annual Meeting (2011)

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Data archiving is a good investment

Piwowar H, Whitlock M, Vision T

Nature (2011)

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DataONE: Data Observation Network for Earth — Preserving Data and Enabling Innovation in the Biological and Environmental Sciences

Michener W, Vieglais D, Vision T, Kunze J, Cruse P, Janée G

D-Lib Magazine (2011)

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DataONE: Data Observation Network for Earth — Preserving Data and Enabling Innovation in the Biological and Environmental Sciences

Michener W, Vieglais D, Vision T, Kunze J, Cruse P, Janée G

D-Lib Magazine (2011)

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees.

Burleigh J, Bansal M, Eulenstein O, Hartmann S, Wehe A, Vision T

Systematic biology (2011)

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Phenoscape: Use cases and anatomy ontology requirements for linking evolutionary and model organism phenotypes

Dahdul W, Balhoff J, Lapp H, Midford P, Vision T, Westerfield M, et al.

CEUR Workshop Proceedings (2011)

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Similarity between semantic description sets: Addressing needs beyond data integration

Vision T, Blake J, Lapp H, Mabee P, Westerfield M

CEUR Workshop Proceedings (2011)

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The iPlant Collaborative: Cyberinfrastructure for Plant Biology

Goff S, Vaughn M, McKay S, Lyons E, Stapleton A, Gessler D, et al.

Frontiers in Plant Science (2011)

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An international bioinformatics infrastructure to underpin the Arabidopsis community.

International Arabidopsis Infomatics Consortium

The Plant cell (2010)

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BUSINESS MODELS AND COST ESTIMATION : DRYAD REPOSITORY CASE STUDY

Beagrie N, Eakin-richards L, Carolina N, Hill C

Society (2010)

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Evaluating data citation and sharing policies in the environmental sciences

Weber N, Piwowar H, Vision T

Proceedings of the ASIST Annual Meeting (2010)

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Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature

Dahdul W, Balhoff J, Engeman J, Grande T, Hilton E, Kothari C, et al.

PLoS ONE (2010)

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Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature.

Dahdul W, Balhoff J, Engeman J, Grande T, Hilton E, Kothari C, et al.

PloS one (2010)

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Genome-Scale Phylogenetics: Inferring the Plant Tree of Life from 18,896 Gene Trees.

Burleigh J, Bansal M, Eulenstein O, Hartmann S, Wehe A, Vision T

Systematic biology (2010)

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Inferring Species Trees From Gene Duplication Episodes

Burleigh J, Bansal M, Eulenstein O, Vision T

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology (2010)

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Inferring species trees from gene duplication episodes

Burleigh J, Bansal M, Eulenstein O, Vision T

2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010 (2010)

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Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).

Stajich J, Wilke S, Ahrén D, Au C, Birren B, Borodovsky M, et al.

Proceedings of the National Academy of Sciences of the United States of America (2010)

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Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).

Stajich J, Wilke S, Ahrén D, Au C, Birren B, Borodovsky M, et al.

Proceedings of the National Academy of Sciences of the United States of America (2010)

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Open Data and the Social Contract of Scientific Publishing

Vision T

BioScience (2010)

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Open Data and the Social Contract of Scientific Publishing

Vision T

BioScience (2010)

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Phenex: ontological annotation of phenotypic diversity.

Balhoff J, Dahdul W, Kothari C, Lapp H, Lundberg J, Mabee P, et al.

PloS one (2010)

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Phenex: ontological annotation of phenotypic diversity.

Balhoff J, Dahdul W, Kothari C, Lapp H, Lundberg J, Mabee P, et al.

PloS one (2010)

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The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age

Dahdul W, Lundberg J, Midford P, Balhoff J, Lapp H, Vision T, et al.

Systematic Biology (2010)

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The teleost anatomy ontology: anatomical representation for the genomics age.

Dahdul W, Lundberg J, Midford P, Balhoff J, Lapp H, Vision T, et al.

Systematic biology (2010)

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A hierarchical model for incomplete alignments in phylogenetic inference.

Cheng F, Hartmann S, Gupta M, Ibrahim J, Vision T

Bioinformatics (Oxford, England) (2009)

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A hierarchical model for incomplete alignments in phylogenetic inference.

Cheng F, Hartmann S, Gupta M, Ibrahim J, Vision T

Bioinformatics (Oxford, England) (2009)

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Business models and cost estimation: Dryad repository case study

Beagrie N, Eakin-Richards L

iPRES2010 (2009)

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Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae.

Faddah D, Ganko E, McCoach C, Pickrell J, Hanlon S, Mann F, et al.

PLoS genetics (2009)

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Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae.

Faddah D, Ganko E, McCoach C, Pickrell J, Hanlon S, Mann F, et al.

PLoS genetics (2009)

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Compensatory evolution in RNA secondary structures increases substitution rate variation among sites.

Knies J, Dang K, Vision T, Hoffman N, Swanstrom R, Burch C

Molecular biology and evolution (2008)

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Compensatory evolution in RNA secondary structures increases substitution rate variation among sites.

Knies J, Dang K, Vision T, Hoffman N, Swanstrom R, Burch C

Molecular biology and evolution (2008)

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Fine mapping a QTL for carbon isotope composition in tomato.

Xu X, Martin B, Comstock J, Vision T, Tauer C, Zhao B, et al.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik (2008)

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Fine mapping a QTL for carbon isotope composition in tomato.

Xu X, Martin B, Comstock J, Vision T, Tauer C, Zhao B, et al.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik (2008)

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Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

Hartmann S, Vision T

BMC evolutionary biology (2008)

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A computational system to select candidate genes for complex human traits.

Gaulton K, Mohlke K, Vision T

Bioinformatics (Oxford, England) (2007)

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A computational system to select candidate genes for complex human traits.

Gaulton K, Mohlke K, Vision T

Bioinformatics (Oxford, England) (2007)

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Comparison of Full-Text Searching to Metadata Searching for Genes in Two Biomedical Literature Cohorts

Hemminger B, Saelim B, Sullivan P

Journal of the American Society for Information Science (2007)

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Comparison of full-text searching to metadata searching for genes in two biomedical literature cohorts

Hemminger B, Saelim B, Sullivan P, Vision T

Journal of the American Society for Information Science and Technology (2007)

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Divergence in expression between duplicated genes in Arabidopsis.

Ganko E, Meyers B, Vision T

Molecular biology and evolution (2007)

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Divergence in expression between duplicated genes in Arabidopsis.

Ganko E, Meyers B, Vision T

Molecular biology and evolution (2007)

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The 2006 NESCent Phyloinformatics Hackathon : A Field Report

Lapp H, Bala S, Balhoff J, Bouck A, Goto N, Holland R, et al.

Source (2007)

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The 2006 NESCent phyloinformatics hackathon: A field report

Lapp H, Bala S, Balhoff J, Bouck A, Goto N, Holder M, et al.

Evolutionary Bioinformatics Online (2007)

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The molecular ecologist's guide to expressed sequence tags

Bouck A, Vision T

Molecular Ecology (2007)

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Assessing the significance of quantitative trait loci in replicable mapping populations.

Zou F, Xu Z, Vision T

Genetics (2006)

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Assessing the significance of quantitative trait loci in replicable mapping populations.

Zou F, Xu Z, Vision T

Genetics (2006)

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Phytome: a platform for plant comparative genomics.

Hartmann S, Lu D, Phillips J, Vision T

Nucleic acids research (2006)

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Taking the First Steps towards a Standard for Reporting on Phylogenies : Minimum Information about a

Leebens-mack J, Vision T, Brenner E, Bowers J, Cannon S, Clement M, et al.

OMICS: A Journal of Integrative Biology (2006)

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Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).

Leebens-Mack J, Vision T, Brenner E, Bowers J, Cannon S, Clement M, et al.

Omics : a journal of integrative biology (2006)

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Tracking the evolution of alternatively spliced exons within the Dscam family.

Crayton M, Powell B, Vision T, Giddings M

BMC evolutionary biology (2006)

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Tracking the evolution of alternatively spliced exons within the Dscam family.

Crayton M, Powell B, Vision T, Giddings M

BMC evolutionary biology (2006)

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Gene order in plants: a slow but sure shuffle.

Vision T

The New phytologist (2005)

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Gene order in plants: a slow but sure shuffle.

Vision T

The New phytologist (2005)

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Improving quantitative trait loci mapping resolution in experimental crosses by the use of genotypically selected samples

Xu Z, Zou F, Vision T

Genetics (2005)

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The effects of resource availability and environmental conditions on genetic rankings for carbon isotope discrimination during growth in tomato and rice

Comstock J, McCouch S, Martin B

Functional plant biology (2005)

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The effects of resource availability and environmental conditions on genetic rankings for carbon isotope discrimination during growth in tomato and rice

Comstock J, McCouch S, Martin B, Tauer C, Vision T, Xu Y, et al.

Functional Plant Biology (2005)

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Contrasting modes of diversification in the Aux/IAA and ARF gene families

Remington D, Vision T, Guilfoyle T, Reed J

Plant physiology (2004)

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Computational Tools and Resources in Plant Genome Informatics

Vision T, Mclysaght A

Ecology (2003)

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Fast identification and statistical evaluation of segmental homologies in comparative maps

Calabrese P, Chakravarty S, Vision T

Bioinformatics (2003)

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Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait

Hoekenga O, Vision T, Shaff J, Monforte A, Lee G, Howell S, et al.

Plant physiology (2003)

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Meeting report An international showcase of bioinformatics research

Vision T

Challenge (2003)

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Meeting report An international showcase of bioinformatics research

Vision T

Genome biology (2003)

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Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana

Zhang L, Vision T, Gaut B

Molecular biology and evolution (2002)

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Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana.

Zhang L, Vision T, Gaut B

Molecular biology and evolution (2002)

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Solid-Phase PCR in Microwells : Effects of Linker Length and Composition on Tethering , Research Report

Thannhauser T, Müller U, Kresovich S

Evaluation (2002)

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Solid-phase PCR in microwells: Effects of linker length and composition on tethering, hybridization, and extension

Carmon A, Vision T, Mitchell S, Thannhauser T, Müller U, Kresovich S

BioTechniques (2002)

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Gene duplication and evolution

Long M, Thornton K, Zhang L, Gaut B, Vision T, Lynch M, et al.

Science (2001)

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Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny

Ku H, Vision T, Liu J, Tanksley S

Proceedings of the National Academy of Sciences of the United States of America (2000)

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Selective mapping: a discrete optimization approach to selecting a population subset for use in a high-density genetic mapping project

Brown D, Vision T

ACM-SIAM symposium on Discrete (2000)

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Selective mapping: a strategy for optimizing the construction of high-density linkage maps

Vision T, Brown D, Shmoys D, Durrett R, Tanksley S

Genetics (2000)

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The origins of genomic duplications in Arabidopsis

Vision T, Brown D, Tanksley S

Science (2000)

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The origins of genomic duplications in Arabidopsis.

Vision T, Brown D, Tanksley S

Science (New York, N.Y.) (2000)

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Pathogen-induced systemic resistance in Ipomoea purpurea

Simms E, Vision T

Oecologia (1995)

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GENOME ARCHAEOLOGY : DETECTING ANCIENT POLYPLOIDY IN CONTEMPORARY GENOMES

Vision T, Brown D

Genome

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Reconstruction of ancestral gene order after segmental duplication and gene loss

Huan J, Prins J, Wang W, Vision T

Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003

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Selective Mapping

Brown D, Tanksley S

Comparative and General Pharmacology

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Professional experience

Associate Professor

University of North Carolina at Chapel Hill Department of Biology

July 2007 - Present

Associate Director for Informatics

National Evolutionary Synthesis Center

January 2006 - June 2011 (5 years 5 months)

Assistant Professor

University of North Carolina at Chapel Hill Department of Biology

July 2001 - June 2007 (5 years 11 months)

Research Scientist

United States Department of Agriculture Office of Rural Development New York

July 1999 - June 2001 (1 year 11 months)

Postdoctoral Associate

Cornell University

July 1998 - June 1999 (11 months)

Education history

University of Chicago

B.A. Biological Sciences

Present

Princeton University Department of Ecology and Evolutionary Biology

PhD

August 1993 - June 1998 (4 years 10 months)