Todd Vision

Associate Professor

Biology Department, University of North Carolina at Chapel Hill

Location
Chapel Hill, North Carolina, United States
Discipline
Biological Sciences
Interests
The evolution of genomes and phenotypes, and applications of computers to studying them. ORCID:0000-0002-6133-2581
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Publications

Data reuse and the open data citation advantage

Piwowar H, Vision T

PeerJ (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A grassroots approach to software sustainability

Cranston K, Vision T, O'Meara B, Lapp H

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Science Incubators: Synthesis Centers and Their Role in the Research Ecosystem

Rodrigo A, Alberts S, Cranston K, Kingsolver J, Lapp H, McClain C et al.

PLoS Biology (2013)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Minimizing the number of episodes and Gallai's theorem on intervals

Czabarka E, Székely L, Vision T

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Taking the First Steps towards a Standard for Reporting on Phylogenies : Minimum Information about a

Leebens-mack J, Vision T, Brenner E, Bowers J, Cannon S, Clement M et al.

OMICS: A Journal of Integrative Biology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The 2006 NESCent phyloinformatics hackathon: A field report

Lapp H, Bala S, Balhoff J, Bouck A, Goto N, Holder M et al.

Evolutionary Bioinformatics Online (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

An international bioinformatics infrastructure to underpin the Arabidopsis community.

International Arabidopsis Infomatics Consortium

The Plant cell (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

Goff S, Vaughn M, McKay S, Lyons E, Stapleton A, Gessler D et al.

Frontiers in Plant Science (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Meeting report An international showcase of bioinformatics research

Vision T

Genome biology (2003)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A computational system to select candidate genes for complex human traits.

Gaulton K, Mohlke K, Vision T

Bioinformatics (Oxford, England) (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Divergence in expression between duplicated genes in Arabidopsis.

Ganko E, Meyers B, Vision T

Molecular biology and evolution (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae.

Faddah D, Ganko E, McCoach C, Pickrell J, Hanlon S, Mann F et al.

PLoS genetics (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Compensatory evolution in RNA secondary structures increases substitution rate variation among sites.

Knies J, Dang K, Vision T, Hoffman N, Swanstrom R, Burch C

Molecular biology and evolution (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

DataONE: Data Observation Network for Earth — Preserving Data and Enabling Innovation in the Biological and Environmental Sciences

Michener W, Vieglais D, Vision T, Kunze J, Cruse P, Janée G

D-Lib Magazine (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Data archiving is a good investment

Piwowar H, Whitlock M, Vision T

Nature (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).

Stajich J, Wilke S, Ahrén D, Au C, Birren B, Borodovsky M et al.

Proceedings of the National Academy of Sciences of the United States of America (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Open Data and the Social Contract of Scientific Publishing

Vision T

BioScience (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Gene order in plants: a slow but sure shuffle.

Vision T

The New phytologist (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Fine mapping a QTL for carbon isotope composition in tomato.

Xu X, Martin B, Comstock J, Vision T, Tauer C, Zhao B et al.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Assessing the significance of quantitative trait loci in replicable mapping populations.

Zou F, Xu Z, Vision T

Genetics (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Business models and cost estimation: Dryad repository case study

Beagrie N, Eakin-Richards L

iPRES2010 (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The teleost anatomy ontology: anatomical representation for the genomics age.

Dahdul W, Lundberg J, Midford P, Balhoff J, Lapp H, Vision T et al.

Systematic biology (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature.

Dahdul W, Balhoff J, Engeman J, Grande T, Hilton E, Kothari C et al.

PloS one (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Tracking the evolution of alternatively spliced exons within the Dscam family.

Crayton M, Powell B, Vision T, Giddings M

BMC evolutionary biology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The effects of resource availability and environmental conditions on genetic rankings for carbon isotope discrimination during growth in tomato and rice

Comstock J, McCouch S, Martin B

Functional plant biology (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A hierarchical model for incomplete alignments in phylogenetic inference.

Cheng F, Hartmann S, Gupta M, Ibrahim J, Vision T

Bioinformatics (Oxford, England) (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees.

Burleigh J, Bansal M, Eulenstein O, Hartmann S, Wehe A, Vision T

Systematic biology (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Inferring Species Trees From Gene Duplication Episodes

Burleigh J, Bansal M, Eulenstein O, Vision T

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Selective mapping: a discrete optimization approach to selecting a population subset for use in a high-density genetic mapping project

Brown D, Vision T

ACM-SIAM symposium on Discrete (2000)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Phenex: ontological annotation of phenotypic diversity.

Balhoff J, Dahdul W, Kothari C, Lapp H, Lundberg J, Mabee P et al.

PloS one (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Assessing the significance of quantitative trait loci in replicable mapping populations.

Zou F, Xu Z, Vision T

Genetics (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana.

Zhang L, Vision T, Gaut B

Molecular biology and evolution (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Fine mapping a QTL for carbon isotope composition in tomato.

Xu X, Martin B, Comstock J, Vision T, Tauer C, Zhao B et al.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Gene order in plants: a slow but sure shuffle.

Vision T

The New phytologist (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The origins of genomic duplications in Arabidopsis.

Vision T, Brown D, Tanksley S

Science (New York, N.Y.) (2000)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

GENOME ARCHAEOLOGY : DETECTING ANCIENT POLYPLOIDY IN CONTEMPORARY GENOMES

Vision T, Brown D

Genome

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Open Data and the Social Contract of Scientific Publishing

Vision T

BioScience (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).

Stajich J, Wilke S, Ahrén D, Au C, Birren B, Borodovsky M et al.

Proceedings of the National Academy of Sciences of the United States of America (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

DataONE: Data Observation Network for Earth — Preserving Data and Enabling Innovation in the Biological and Environmental Sciences

Michener W, Vieglais D, Vision T, Kunze J, Cruse P, Janée G

D-Lib Magazine (2011)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).

Leebens-Mack J, Vision T, Brenner E, Bowers J, Cannon S, Clement M et al.

Omics : a journal of integrative biology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The 2006 NESCent Phyloinformatics Hackathon : A Field Report

Lapp H, Bala S, Balhoff J, Bouck A, Goto N, Holland R et al.

Source (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Compensatory evolution in RNA secondary structures increases substitution rate variation among sites.

Knies J, Dang K, Vision T, Hoffman N, Swanstrom R, Burch C

Molecular biology and evolution (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Reconstruction of ancestral gene order after segmental duplication and gene loss

Huan J, Prins J, Wang W, Vision T

Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Comparison of Full-Text Searching to Metadata Searching for Genes in Two Biomedical Literature Cohorts

Hemminger B, Saelim B, Sullivan P

Journal of the American Society for Information Science (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

Hartmann S, Vision T

BMC evolutionary biology (2008)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Phytome: a platform for plant comparative genomics.

Hartmann S, Lu D, Phillips J, Vision T

Nucleic acids research (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Computational Tools and Resources in Plant Genome Informatics

Vision T, Mclysaght A

Ecology (2003)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Meeting report An international showcase of bioinformatics research

Vision T

Challenge (2003)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A computational system to select candidate genes for complex human traits.

Gaulton K, Mohlke K, Vision T

Bioinformatics (Oxford, England) (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Divergence in expression between duplicated genes in Arabidopsis.

Ganko E, Meyers B, Vision T

Molecular biology and evolution (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae.

Faddah D, Ganko E, McCoach C, Pickrell J, Hanlon S, Mann F et al.

PLoS genetics (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

BUSINESS MODELS AND COST ESTIMATION : DRYAD REPOSITORY CASE STUDY

Beagrie N, Eakin-richards L, Carolina N, Hill C

Society (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age

Dahdul W, Lundberg J, Midford P, Balhoff J, Lapp H, Vision T et al.

Systematic Biology (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature

Dahdul W, Balhoff J, Engeman J, Grande T, Hilton E, Kothari C et al.

PLoS ONE (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Tracking the evolution of alternatively spliced exons within the Dscam family.

Crayton M, Powell B, Vision T, Giddings M

BMC evolutionary biology (2006)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The effects of resource availability and environmental conditions on genetic rankings for carbon isotope discrimination during growth in tomato and rice

Comstock J, McCouch S, Martin B, Tauer C, Vision T, Xu Y et al.

Functional Plant Biology (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

A hierarchical model for incomplete alignments in phylogenetic inference.

Cheng F, Hartmann S, Gupta M, Ibrahim J, Vision T

Bioinformatics (Oxford, England) (2009)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Solid-Phase PCR in Microwells : Effects of Linker Length and Composition on Tethering , Research Report

Thannhauser T, Müller U, Kresovich S

Evaluation (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Genome-Scale Phylogenetics: Inferring the Plant Tree of Life from 18,896 Gene Trees.

Burleigh J, Bansal M, Eulenstein O, Hartmann S, Wehe A, Vision T

Systematic biology (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Selective Mapping

Brown D, Tanksley S

Comparative and General Pharmacology

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Phenex: ontological annotation of phenotypic diversity.

Balhoff J, Dahdul W, Kothari C, Lapp H, Lundberg J, Mabee P et al.

PloS one (2010)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Improving quantitative trait loci mapping resolution in experimental crosses by the use of genotypically selected samples

Xu Z, Zou F, Vision T

Genetics (2005)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Gene duplication and evolution

Long M, Thornton K, Zhang L, Gaut B, Vision T, Lynch M et al.

Science (2001)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Selective mapping: a strategy for optimizing the construction of high-density linkage maps

Vision T, Brown D, Shmoys D, Durrett R, Tanksley S

Genetics (2000)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait

Hoekenga O, Vision T, Shaff J, Monforte A, Lee G, Howell S et al.

Plant physiology (2003)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Fast identification and statistical evaluation of segmental homologies in comparative maps

Calabrese P, Chakravarty S, Vision T

Bioinformatics (2003)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana

Zhang L, Vision T, Gaut B

Molecular biology and evolution (2002)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The molecular ecologist's guide to expressed sequence tags

Bouck A, Vision T

Molecular Ecology (2007)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Contrasting modes of diversification in the Aux/IAA and ARF gene families

Remington D, Vision T, Guilfoyle T, Reed J

Plant physiology (2004)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny

Ku H, Vision T, Liu J, Tanksley S

Proceedings of the National Academy of Sciences of the United States of America (2000)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

The origins of genomic duplications in Arabidopsis

Vision T, Brown D, Tanksley S

Science (2000)

  • -- Readers Readers not available. This publication is not currently accessible in the Mendeley catalog.

Professional experience

Associate Professor

Biology Department, University of North Carolina at Chapel Hill

July 2007 - Present

Associate Director for Informatics

National Evolutionary Synthesis Center

January 2006 - June 2011 (5 years 5 months)

Assistant Professor

Biology Department, University of North Carolina at Chapel Hill

July 2001 - June 2007 (5 years 11 months)

Research Scientist

United States Department of Agriculture

July 1999 - June 2001 (1 year 11 months)

Postdoctoral Associate

Cornell University

July 1998 - June 1999 (11 months)

Education history

University of Chicago

B.A. Biological Sciences

Present

Department of Ecology and Evolutionary Biology at Princeton University

PhD

August 1993 - June 1998 (4 years 10 months)