Archiving next generation sequencing data

  • Shumway M
  • Cochrane G
  • Sugawara H
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Abstract

Next generation sequencing platforms are producing biological sequencing data in unprecedented amounts. The partners of the International Nucleotide Sequencing Database Collaboration, which includes the National Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EBI), and the DNA Data Bank of Japan (DDBJ), have established the Sequence Read Archive (SRA) to provide the scientific community with an archival destination for next generation data sets. The SRA is now accessible at http://www.ncbi.nlm.nih.gov/Traces/sra from NCBI, at http://www.ebi.ac.uk/ena from EBI and at http://www.ddbj.nig.ac.jp/sub/tracesra-e.html from DDBJ. Users of these resources can obtain data sets deposited in any of the three SRA instances. Links and submission instructions are provided. The Author(s) 2009. Published by Oxford University Press.

Author-supplied keywords

  • animal
  • animals
  • article
  • bioinformatics
  • biology
  • computational biology
  • computer
  • computer program
  • computers
  • databases
  • dna
  • dna data bank japan
  • dna sequence
  • europe
  • genetic
  • genetic database
  • genomics
  • human
  • humans
  • information processing
  • information retrieval
  • information service
  • information storage
  • information storage retrieval
  • internet
  • japan
  • library
  • methodology
  • national library medicine (u.s.)
  • nucleic acid
  • nucleic acid database
  • priority journal
  • sequence analysis
  • sequence database
  • software
  • united states

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Authors

  • M Shumway

  • G Cochrane

  • H Sugawara

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