A computer program for aligning a cDNA sequence with a genomic DNA sequence

  • Florea L
  • Hartzell G
  • Zhang Z
 et al. 
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We address the problem of efficiently aligning a transcribed and spliced DNA sequence with a genomic sequence containing that gene, allowing for introns in the genomic sequence and a relatively small number of sequencing errors. A freely available computer program, described herein, solves the problem for a 100-kb genomic sequence in a few seconds on a workstation.

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  • Liliana Florea

  • George Hartzell

  • Zheng Zhang

  • Gerald M. Rubin

  • Webb Miller

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