The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging.

  • Goldberg I
  • Allan C
  • Burel J
 et al. 
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Abstract

The Open Microscopy Environment (OME) defines a data model and a software implementation to serve as an informatics framework for imaging in biological microscopy experiments, including representation of acquisition parameters, annotations and image analysis results. OME is designed to support high-content cell-based screening as well as traditional image analysis applications. The OME Data Model, expressed in Extensible Markup Language (XML) and realized in a traditional database, is both extensible and self-describing, allowing it to meet emerging imaging and analysis needs.

Author-supplied keywords

  • Computational Biology
  • Computational Biology: methods
  • Computer Simulation
  • Databases, Factual
  • Imaging, Three-Dimensional
  • Microscopy
  • Microscopy: methods
  • Software
  • User-Computer Interface

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Authors

  • Ilya G Goldberg

  • Chris Allan

  • Jean-Marie Burel

  • Doug Creager

  • Andrea Falconi

  • Harry Hochheiser

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