Mendeley has been working with a wide range of universities:
- University of Alabama - Birmingham
- Albert Einstein College of Medicine
- University of Alberta
- University of Arizona
- University of Arkansas at Fort Smith - Boreham Library
- Blekinge Institute of Technology
- Brigham Young University
- University of British Columbia (2)
- University of California - Berkeley (2)
- University of California - Davis
- University of California, Los Angeles
- University of California - San Diego
- University of California - San Francisco (2)
- University of California - Irvine
- University of Cambridge - University Library
- University of Cambridge - Balfour & Newton Libraries
- University of Cambridge - Science Portal
- Canadian Federation for the Humanities and Social Sciences
- Technische Universität Chemnitz
- Centrale Lyon - Bibliothèque Michel Serres
- Centre College
- CERN
- University of Chicago (2) (3)
- Pontifical Catholic University of Chile
- University of Cincinnati
- University of Colorado at Boulder
- Columbia University (2)
- Barnard College - Columbia University
- University of Copenhagen
- University College Cork
- Cornell University
- University of Cyprus
- Dartmouth College
- University of Denver - Westminster Law Library
- University College Dublin - Geary Institute
- Duke University
- Technische Universiteit Eindhoven
- Emory University
- University of Florida (2)
- Fred Hutchinson Cancer Research Center
- George Mason University
- University of Georgia
- Georgia Tech
- Goethe-Universität - Frankfurt am Main
- University of Groningen
- Johns Hopkins University - Sheridan Libraries
- Harvard University (2) (3) (4)
- University of Hawai'i
- Heriot-Watt University Edinburgh
- University of Illinois
- University of Illinois at Springfield
- University of Illinois at Urbana-Champaign
- Imperial College London
- IONA College, New Rochelle
- Joint Information Systems Committee
- Kalaidos Fachhochschule Schweiz
- Kutztown University
- Lancaster University
- University of Leicester (2)
- University Leiden
- University of Manitoba
- Mary Baldwin College
- University of Maryland
- Marymount University
- Massachusetts Institute of Technology
- University of Michigan (2)
- Michigan State University
- University of Minnesota
- Montana State University
- New York University
- University of Nevada, Reno
- NHS Trust - North West Ambulance Service
- University of North Carolina (2)
- North Carolina State University
- University of Northern Colorado
- Northwestern University
- University of Nottingham - Malaysia Campus
- Ohio State University
- Oregon State University
- Purdue University - Biometric Standards, Performance & Assurance Laboratory
- Penn State University
- Princeton University
- The University of Queensland Australia
- Radcliffe Science Library
- Research Information Network
- Rice University
- University of Rochester (PDF)
- San Diego State University (2)
- The Serbian Academy of Sciences and Arts
- University of Sheffield
- University of Southern California
- Stanford University
- Stanford University - School of Medicine
- Stanford University - Social Science Research Center
- University of Stockholm
- Swansea University
- Syracuse University (2)
- University of Texas, Austin (2)
- Texas A&M University
- University of Texas at Tyler
- Universita di Torino
- Trinity College - Graduate Studies
- Eberhard Karls Universität Tübingen
- UK PubMed Central
- University Corporation for Atmospheric Research
- University of Utah
- Vanderbilt University
- University of Vermont
- University of Washington
- Washington and Lee University Library
- Washington University in St. Louis
- Weill Cornell Medical School
- The Welsh Repository Network
- University of Wisconsin, Madison
- Yale University (2) (3)
- York University
- Zürcher Hochschule der Künste