Prediction of the structure of protein complexes by docking methods is a well-established research field. The intermolecular energy landscapes in protein–protein interactions can be used to refine docking predictions and to detect macro-characteristics, such as the binding funnel. A new GRAMM web server for protein docking predicts a spectrum of docking poses that characterize the intermolecular energy landscape in protein interaction. A user-friendly interface provides options to choose free or template-based docking, as well as other advanced features, such as clustering of the docking poses, and interactive visualization of the docked models.
CITATION STYLE
Singh, A., Copeland, M. M., Kundrotas, P. J., & Vakser, I. A. (2024). GRAMM Web Server for Protein Docking. In Methods in Molecular Biology (Vol. 2714, pp. 101–112). Humana Press Inc. https://doi.org/10.1007/978-1-0716-3441-7_5
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