This paper describes representations of biological processes based on Rewriting Logic and Petri net formalisms and mappings between these representations used in the Pathway Logic Assistant. The mappings are shown to preserve properties of interest. In addition a relevant subnet transformation is defined, that specializes a Petri net model to a specific query to reduce the number of transitions that must be considered when answering the query. The transformation is shown to preserve the query in the sense that no answers are lost. © Springer-Verlag Berlin Heidelberg 2006.
CITATION STYLE
Talcott, C., & Dill, D. L. (2006). Multiple representations of biological processes. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 4220 LNBI, pp. 221–245). Springer Verlag. https://doi.org/10.1007/11880646_10
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