RNA cotranscriptional folding refers to the phenomenon in which an RNA transcript folds upon itself while being synthesized out of a gene. The oritatami system (OS) is a computation model of this phenomenon, which lets its sequence of beads (abstract molecules) fold cotranscriptionally by the interactions between beads according to its ruleset. We study the problem of reducing the ruleset size while maintaining the terminal conformations geometrically same. We first prove the hardness of finding the smallest ruleset, and suggest two approaches that reduce the ruleset size efficiently.
CITATION STYLE
Han, Y. S., & Kim, H. (2017). Ruleset optimization on isomorphic oritatami systems. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 10467 LNCS, pp. 33–45). Springer Verlag. https://doi.org/10.1007/978-3-319-66799-7_3
Mendeley helps you to discover research relevant for your work.