DNA methylation in Cosmc promoter region and aberrantly glycosylated IgA1 associated with pediatric IgA nephropathy

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Abstract

IgA nephropathy (IgAN) is one of the most common glomerular diseases leading to endstage renal failure. Elevation of aberrantly glycosylated IgA1 is a key feature of it. The expression of the specific molecular chaperone of core1β1, 3galactosyl transferase (Cosmc) is known to be reduced in IgAN. We aimed to investigate whether the methylation of CpG islands of Cosmc gene promoter region could act as a possible mechanism responsible for down-regulation of Cosmc and related higher secretion of aberrantly glycosylated IgA1in lymphocytes from children with IgA nephropathy. Three groups were included: IgAN children (n = 26), other renal diseases (n = 11) and healthy children (n = 13). B-lymphocytes were isolated and cultured, treated or not with IL-4 or 5-Aza-2′-deoxycytidine (AZA). The levels of DNA methylation of Cosmc promotor region were not significantly different between the lymphocytes of the three children populations (P = 0.113), but there were significant differences between IgAN lymphocytes and lymphocytes of the other two children populations after IL-4 (P<0.0001) or AZA (P<0.0001). Cosmc mRNA expression was low in IgAN lymphocytes compared to the other two groups (P<0.0001). The level of aberrantly glycosylated IgA1 was markedly higher in IgAN group compared to the other groups (P<0.0001). After treatment with IL-4, the levels of Cosmc DNA methylation and aberrantly glycosylated IgA1 in IgAN lymphocytes were remarkably higher than the other two groups (P<0.0001) with more markedly decreased Cosmc mRNA content (P<0.0001). After treatment with AZA, the levels in IgAN lymphocytes were decreased, but was still remarkably higher than the other two groups (P<0.0001), while Cosmc mRNA content in IgAN lymphocytes were more markedly increased than the other two groups (P<0.0001). The alteration of DNA methylation by IL-4 or AZA specifically correlates in IgAN lymphocytes with alterations in Cosmc mRNA expression and with the level of aberrantly glycosylated IgA1 (r = -0.948, r = 0. 707). Our results suggested that hypermethylation of Cosmc promoter region could be a key mechanism for the reduction of Cosmc mRNA expression in IgAN lymphocytes with associated increase in aberrantly glycosylated IgA1.

Figures

  • Table 1. Demographic and clinical features of patients and healthy children participants.
  • Figure 1. Methylation status of CpG islands in the promoter regions of Cosmc gene.DNAmethylation levels of CpG islands in the promoter regions of Cosmc gene were detected by bisulfite-modification sequencing PCR, and high-throughput quantitative DNAmethylation analysis. Samples are B lymphocytes from peripheral blood of the 3 groups (IgAN patients, n = 26; other renal disease patients, n = 11; healthy children participants, n = 13). Error bars represent s.e.m. and * denotes a p-value 0.05. * * 0.01. * * *for p-value 0.001. (a) DNAmethylation in 3 groups after 48 hours culturing. (b) DNA methylation in 3 groups after 48 hours culturing with IL-4 (10ng/ml). (c) DNAmethylation in 3 groups after 48 hours culturing with AZA (1 umol/l). (d) DNA methylation in 3 groups treated or not (beige) with IL-4 (green) or AZA (blue). (e, f) Compared to plain medium, IL-4 or AZA caused the alteration of DNA methylation levels in the other two groups.
  • Figure 2. ThemRNA expression levels ofCosmc. The mRNA expression levels ofCosmc by RT-PCR. Samples are B lymphocytes from peripheral blood of the 3 groups (IgAN patients, n = 26; other renal disease patients, n = 11; healthy children participants, n = 13). Error bars represent s.e.m. and * * * for pvalue 0.001. (a) CosmcmRNA expression in 3 groups after 48 hours culturing. (b)CosmcmRNA expression in 3 groups after 48 hours culturing with IL-4 (10 ng/ml). (c) CosmcmRNA expression in 3 groups after 48 hours culturing with AZA (1 umol/l). (d)CosmcmRNA expression in 3 groups treated or not (beige) with IL-4 (green) or AZA (blue). (e, f) Compared to plain medium, IL-4 or AZA caused the alteration of CosmcmRNA levels in the other two groups. The mRNA data in Figure was the relative quantification of the ratio of Cosmc/GAPDH in each sample.
  • Figure 3. The levels of aberrantly glycosylated IgA1. The levels of aberrantly glycosylated IgA1 in culture supernatant of B lymphocytes were detected by ELISA. B lymphocytes were from peripheral blood of the 3 groups (IgAN patients, n = 26; other renal disease patients, n = 11; healthy children participants, n = 13). Error bars represent s.e.m. and * denotes a p-value 0.05. * * 0.01. * * * for p-value 0.001. (a) The levels of aberrantly glycosylated IgA1 in 3 groups after 48 hours culturing. (b) The levels of aberrantly glycosylated IgA1 in 3 groups after 48 hours culturing with IL-4(10ng/ml). (c) The levels of aberrantly glycosylated IgA1 in 3 groups after 48 hours culturing with AZA (1 umol/l). (d) The levels of aberrantly glycosylated IgA1 in 3 groups treated or not (beige) with IL-4 (green) or AZA (blue). (e, f) Compared to plain medium, IL-4 or AZA caused the alteration of aberrantly glycosylated IgA1 levels in the other two groups.
  • Figure 4. Analysis of correlation. Pearson correlations in 3 groups (IgAN group, n = 78; other renal disease group, n = 33; healthy children group, n = 39) between (A, B, C) Cosmc DNAmethylation and CosmcmRNA expression; (D,E,F) between aberrantly glycosylated IgA1 and CosmcmRNA expression; (G, H,I) between aberrantly glycosylated IgA1 and Cosmc DNAmethylation.

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Sun, Q., Zhang, J., Zhou, N., Liu, X., & Shen, Y. (2015). DNA methylation in Cosmc promoter region and aberrantly glycosylated IgA1 associated with pediatric IgA nephropathy. PLoS ONE, 10(2). https://doi.org/10.1371/journal.pone.0112305

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