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TROLL - Tandem repeat occurence locator

Bioinformatics (2002) 18(4) 634-636
DOI: 10.1093/bioinformatics/18.4.634
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Abstract

Summary: Tandem Repeat Occurrence Locator (TROLL), is a light-weight Simple Sequence Repeat (SSR) finder based on a slight modification of the Aho-Corasick algorithm. It is fast and only requires a standard Personal Computer (PC) to operate. We report running times of 127 s to find all SSRs of length 20 bp or more on the complete Arabdopsis genome-approx. 130 Mbases divided in five chromosomes-using a PC Athlon 650 MHz with 256 MB of RAM.

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Castelo, A. T., Martins, W., & Gao, G. R. (2002). TROLL - Tandem repeat occurence locator. Bioinformatics, 18(4), 634–636. https://doi.org/10.1093/bioinformatics/18.4.634

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