Decision tree as a tool in the classification of lima bean accessions

Abstract

Morpho-agronomic characterization studies aiming at the discrimination and classification of lima bean accessions in relation to the centers of domestication and biological status have been of great importance for conserving the biodiversity of this species. For this purpose, researchers have widely used the multivariate analysis called discriminant analysis, which is not always capable of producing satisfactory results. Computational intelligence-based classifiers are additional tools for understanding complex classification problems. In this study, the objective was to test the use of the decision tree in the classification of lima bean according to the centers of domestication and biological status (cultivated and wild), based on eight phenotypic traits of the seed. Sixty accessions of lima bean from the Phaseolus Germplasm Bank of Universidade Federal do Piauí (BGP / UFPI) were evaluated, and classification was performed using two approaches: conventional statistics with discriminant analysis of principal components (DAPC) and computational intelligence through decision tree (DT). The results showed that the use of DT was efficient to identify patterns in the classification of lima bean accessions, due to its comprehensibility. Seed weight was one of the main descriptors used to explain the origin and diversity of the species. The results found will be useful for studies that involve the conservation of genetic resources, mainly for the maintenance of germplasm banks and in breeding programs. In addition, it is recommended to integrate machine learning algorithms in studies aimed at classifying lima bean.