Analysis of RNA stability at genome-wide level is an advanced method in RNA biology that examines the half-life of each transcript. In particular, a pulse-labeling method using uridine analogs enables the determination of half-life of each transcript under physiologically undisturbed conditions. The technique involves pulse labeling of endogenous RNAs in mammalian cells with 5′-bromouridine (BrU), followed by measuring the chronological decrease of BrU-labeled RNAs using deep sequencing (BRIC-seq). Here, we describe a detailed protocol and technical tips for BRIC-seq.
CITATION STYLE
Yamada, T., Imamachi, N., Onoguchi-Mizutani, R., Imamura, K., Suzuki, Y., & Akimitsu, N. (2018). 5′-bromouridine IP chase (BRIC)-seq to determine RNA half-lives. In Methods in Molecular Biology (Vol. 1720, pp. 1–13). Humana Press Inc. https://doi.org/10.1007/978-1-4939-7540-2_1
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