The need for a comprehensive consolidated guide for R packages and tools that are used in microbiome data analysis is significant; thus, we aim to provide a detailed step-by-step dissection of the most used R packages and tools in the field of microbiome data integration and analysis. The guideline aims to be a user-friendly simplification and tutorial on five main packages, namely phyloseq, MegaR, DADA2, Metacoder, and microbiomeExplorer due to their high efficiency and benefit in microbiome data analysis.
CITATION STYLE
Boctor, J., Oweda, M., & El-Hadidi, M. (2023). Comprehensive Guideline for Microbiome Analysis Using R. In Methods in Molecular Biology (Vol. 2649, pp. 393–436). Humana Press Inc. https://doi.org/10.1007/978-1-0716-3072-3_20
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